If the type is not one of the standard defined models, then it is checked to see if it is a valid genome. If so, the model and state files (if not set) are searched for in {Data}/models and {Data}/models/genes """ import os import json import numpy as np from Modules.misc import oops, terminate, set_docstring, parse_options from Modules.modelio import ModelIO import Modules.genomics as genomics import Modules.models as models import Modules.frameops as frameops set_docstring(__doc__) def setup(options): """ Create model configuration """ # set up our initial state errors = False # If user specified a path to a model, then we have to fix up the model_type. # If the path is just a model name, delete the path, this will ensure that # the correct paths get set up by ModelIO() print(options) if 'paths' in options and 'model' in options['paths']:
def test_set_docstring(): """ Test for misc.set_docstring """ misc.set_docstring(_T1) assert misc._DOCSTRING == _T1