TEMP_FILE.write('-outPathTemp '+LOCAL_DATASET_PATH_TRAC_TEMP+'\n')
TEMP_FILE.close()
a070_RunTracing.main( FARSIGHT_BIN_EXE, optionsTracing, runTrac_log, LOCAL_DATASET_PATH_DATA )
elapsed_1 = (time.time() - start_1)
print "\t\tTime_1: hm: "+str(round(elapsed_1/3600))+":"+str(round(elapsed_1/60))
if runTrac_db == 1:
start_2 = time.time()
runTrac_db_log = LOCAL_DATASET_PATH_LOG +'/runTrac_db.log'
TEMP_FILE = open(runTrac_db_log, 'w')
TEMP_FILE.write('TracingLog\n')
TEMP_FILE.close()
# Trace editor projection
a024_ProjectFloat.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_TRAC_DEBUG, LOCAL_DATASET_PATH_TRAC_TEMP+'/GFP_MNT_PRE', runTrac_db_log, 'ORG', 'NRRD' )
#a021_Project.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_SEGM_DEBUG, FILE_GFP_BS_CV_RE_bit+'_label', runSegm_db_log, 'ORG_RES_BIN' )
#a023_ProjectRGB.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_SEGM_DEBUG, FILE_GFP_BS_CV_RE_bit, FILE_GFP_BS_CV_RE_bit+'_soma', '_GFP_SOMA_', runSegm_db_log )
#a023_ProjectRGB.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_SEGM_DEBUG, FILE_DAP_BS_RE_bit, FILE_GFP_BS_CV_RE_bit+'_label', '_DAPI_LABEL_', runSegm_db_log )
elapsed_2 = (time.time() - start_2)
print "\t\tTime_2: hm: "+str(round(elapsed_2/3600))+":"+str(round(elapsed_1/60))
if( REMOVE_TEMP_TRAC == 1 ):
shutil.rmtree(LOCAL_DATASET_PATH_TRAC_TEMP)
print "# ---------------------------------------------------------------------------------------------------------------------------------------"
print "# Run AstroTracing: "+DATA_FOLDER+' '+str(datetime.datetime.now())
print "# ---------------------------------------------------------------------------------------------------------------------------------------"
if runAstroTrac == 1:
start_1 = time.time()
if REMOVE_TEMP_TRAC == 1:
shutil.rmtree(LOCAL_DATASET_PATH_TRAC_TEMP)
if runTrac_db == 1:
start_2 = time.clock()
runTrac_db_log = LOCAL_DATASET_PATH_LOG + "/runTrac_db.log"
TEMP_FILE = open(runTrac_db_log, "w")
TEMP_FILE.write("TracingLog\n")
TEMP_FILE.close()
# Trace editor projection
a024_ProjectFloat.main(
LOCAL_DATASET_PATH_LOG,
FARSIGHT_BIN_EXE,
LOCAL_DATASET_PATH_TRAC_DEBUG,
LOCAL_DATASET_PATH_TRAC_TEMP + "/GFP_MNT_PRE",
runTrac_db_log,
"ORG",
"NRRD",
)
# a021_Project.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_SEGM_DEBUG, FILE_GFP_BS_CV_RE_bit+'_label', runSegm_db_log, 'ORG_RES_BIN' )
# a023_ProjectRGB.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_SEGM_DEBUG, FILE_GFP_BS_CV_RE_bit, FILE_GFP_BS_CV_RE_bit+'_soma', '_GFP_SOMA_', runSegm_db_log )
# a023_ProjectRGB.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_SEGM_DEBUG, FILE_DAP_BS_RE_bit, FILE_GFP_BS_CV_RE_bit+'_label', '_DAPI_LABEL_', runSegm_db_log )
elapsed_2 = time.clock() - start_2
print "\t\tTime_2: " + str(elapsed_2)
# print "# ---------------------------------------------------------------------------------------------------------------------------------------"
# print "# Move Files: "+DATA_FOLDER
# print "# ---------------------------------------------------------------------------------------------------------------------------------------"
# if( MOVE_RESULTS == 1):