TEMP_FILE.write('-outPathTemp '+LOCAL_DATASET_PATH_TRAC_TEMP+'\n') TEMP_FILE.close() a070_RunTracing.main( FARSIGHT_BIN_EXE, optionsTracing, runTrac_log, LOCAL_DATASET_PATH_DATA ) elapsed_1 = (time.time() - start_1) print "\t\tTime_1: hm: "+str(round(elapsed_1/3600))+":"+str(round(elapsed_1/60)) if runTrac_db == 1: start_2 = time.time() runTrac_db_log = LOCAL_DATASET_PATH_LOG +'/runTrac_db.log' TEMP_FILE = open(runTrac_db_log, 'w') TEMP_FILE.write('TracingLog\n') TEMP_FILE.close() # Trace editor projection a024_ProjectFloat.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_TRAC_DEBUG, LOCAL_DATASET_PATH_TRAC_TEMP+'/GFP_MNT_PRE', runTrac_db_log, 'ORG', 'NRRD' ) #a021_Project.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_SEGM_DEBUG, FILE_GFP_BS_CV_RE_bit+'_label', runSegm_db_log, 'ORG_RES_BIN' ) #a023_ProjectRGB.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_SEGM_DEBUG, FILE_GFP_BS_CV_RE_bit, FILE_GFP_BS_CV_RE_bit+'_soma', '_GFP_SOMA_', runSegm_db_log ) #a023_ProjectRGB.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_SEGM_DEBUG, FILE_DAP_BS_RE_bit, FILE_GFP_BS_CV_RE_bit+'_label', '_DAPI_LABEL_', runSegm_db_log ) elapsed_2 = (time.time() - start_2) print "\t\tTime_2: hm: "+str(round(elapsed_2/3600))+":"+str(round(elapsed_1/60)) if( REMOVE_TEMP_TRAC == 1 ): shutil.rmtree(LOCAL_DATASET_PATH_TRAC_TEMP) print "# ---------------------------------------------------------------------------------------------------------------------------------------" print "# Run AstroTracing: "+DATA_FOLDER+' '+str(datetime.datetime.now()) print "# ---------------------------------------------------------------------------------------------------------------------------------------" if runAstroTrac == 1: start_1 = time.time()
if REMOVE_TEMP_TRAC == 1: shutil.rmtree(LOCAL_DATASET_PATH_TRAC_TEMP) if runTrac_db == 1: start_2 = time.clock() runTrac_db_log = LOCAL_DATASET_PATH_LOG + "/runTrac_db.log" TEMP_FILE = open(runTrac_db_log, "w") TEMP_FILE.write("TracingLog\n") TEMP_FILE.close() # Trace editor projection a024_ProjectFloat.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_TRAC_DEBUG, LOCAL_DATASET_PATH_TRAC_TEMP + "/GFP_MNT_PRE", runTrac_db_log, "ORG", "NRRD", ) # a021_Project.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_SEGM_DEBUG, FILE_GFP_BS_CV_RE_bit+'_label', runSegm_db_log, 'ORG_RES_BIN' ) # a023_ProjectRGB.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_SEGM_DEBUG, FILE_GFP_BS_CV_RE_bit, FILE_GFP_BS_CV_RE_bit+'_soma', '_GFP_SOMA_', runSegm_db_log ) # a023_ProjectRGB.main( LOCAL_DATASET_PATH_LOG, FARSIGHT_BIN_EXE, LOCAL_DATASET_PATH_SEGM_DEBUG, FILE_DAP_BS_RE_bit, FILE_GFP_BS_CV_RE_bit+'_label', '_DAPI_LABEL_', runSegm_db_log ) elapsed_2 = time.clock() - start_2 print "\t\tTime_2: " + str(elapsed_2) # print "# ---------------------------------------------------------------------------------------------------------------------------------------" # print "# Move Files: "+DATA_FOLDER # print "# ---------------------------------------------------------------------------------------------------------------------------------------" # if( MOVE_RESULTS == 1):