def sbmlToCellML(sbml):
""" Convert SBML to CellML string.
:param sbml: SBML string or file
:type sbml: str | file
:return: CellML
:rtype: str
"""
if os.path.isfile(sbml):
code = antimony.loadSBMLFile(sbml)
else:
code = antimony.loadSBMLString(sbml)
_checkAntimonyReturnCode(code)
return antimony.getCellMLString(None)
def sbmlToCellML(sbml):
""" Convert SBML to CellML string.
:param sbml: SBML string or file
:type sbml: str | file
:return: CellML
:rtype: str
"""
if os.path.isfile(sbml):
code = antimony.loadSBMLFile(sbml)
else:
code = antimony.loadSBMLString(sbml)
_checkAntimonyReturnCode(code)
return antimony.getCellMLString(None)
def antimonyToCellML(ant):
""" Convert Antimony to CellML string.
:param ant: Antimony string or file
:type ant: str | file
:return: CellML
:rtype: str
"""
if os.path.isfile(ant):
code = antimony.loadAntimonyFile(ant)
else:
code = antimony.loadAntimonyString(ant)
_checkAntimonyReturnCode(code)
mid = antimony.getMainModuleName()
return antimony.getCellMLString(mid)
def antimonyToCellML(ant):
""" Convert Antimony to CellML string.
:param ant: Antimony string or file
:type ant: str | file
:return: CellML
:rtype: str
"""
if os.path.isfile(ant):
code = antimony.loadAntimonyFile(ant)
else:
code = antimony.loadAntimonyString(ant)
_checkAntimonyReturnCode(code)
mid = antimony.getMainModuleName()
return antimony.getCellMLString(mid)
# file for export
f_matlab = tempfile.NamedTemporaryFile(suffix=".m")
# export current model state
r.exportToMatlab(f_matlab.name)
# to export the initial state when the model was loaded
# set the current argument to False
r.exportToMatlab(f_matlab.name, current=False)
# The string representations of the current model are available via
str_matlab = r.getCurrentMatlab()
# and of the initial state when the model was loaded via
str_matlab = r.getMatlab()
print(str_matlab)
# In[5]:
import antimony
antimony.loadAntimonyString('''S1 -> S2; k1*S1; k1 = 0.1; S1 = 10''')
ant_str = antimony.getCellMLString(antimony.getMainModuleName())
print(ant_str)
# In[6]:
import tellurium as te
import tempfile
# load model
r = te.loada('S1 -> S2; k1*S1; k1 = 0.1; S1 = 10')
# file for export
f_matlab = tempfile.NamedTemporaryFile(suffix=".m")
# export current model state
r.exportToMatlab(f_matlab.name)
# to export the initial state when the model was loaded
# set the current argument to False
r.exportToMatlab(f_matlab.name, current=False)
# The string representations of the current model are available via
str_matlab = r.getCurrentMatlab()
# and of the initial state when the model was loaded via
str_matlab = r.getMatlab()
print(str_matlab)
# In[5]:
import antimony
antimony.loadAntimonyString('''S1 -> S2; k1*S1; k1 = 0.1; S1 = 10''')
ant_str = antimony.getCellMLString(antimony.getMainModuleName())
print(ant_str)
# In[6]:
