def setUp(self): # Set configuration variables. self._config = get_config(os.environ["KB_TEST_CONFIG"]) # Get an authorization token for the test user. wsClient = Workspace(self._config["workspace_url"], user_id=self._config["test_user"], password=self._config["test_pwd"]) self._token = wsClient._headers['AUTHORIZATION']
def setUp(self): # Set configuration variables. self._config = get_config(os.environ["KB_TEST_CONFIG"]) # Get an authorization token for the test user. wsClient = Workspace(self._config["workspace_url"], user_id=self._config["test_user"], password=self._config["test_pwd"]) self._token = wsClient._headers['AUTHORIZATION']
SEE ALSO pa-gendata AUTHORS Matt Benedict, Mike Mundy ''' # Main script function if __name__ == "__main__": # Parse arguments. parser = argparse.ArgumentParser(formatter_class=argparse.RawDescriptionHelpFormatter, prog='pa-savedata', epilog=desc3) parser.add_argument('configFilePath', help='path to configuration file', action='store', default=None) usage = parser.format_usage() parser.description = desc1 + ' ' + usage + desc2 parser.usage = argparse.SUPPRESS args = parser.parse_args() # Get the probabilistic_annotation section from the configuration file. config = get_config(args.configFilePath) # Create a DataParser object for working with the static database files. dataParser = DataParser(config) # Store the static database files in Shock. paClient = ProbabilisticAnnotation(url=get_url()) dataParser.storeDatabaseFiles(paClient._headers['AUTHORIZATION']) exit(0)
def setUp(self): self.cmd = os.path.join(os.environ["KB_TOP"], "bin/pa-url") self.config = get_config(os.environ["KB_TEST_CONFIG"])
''' # Main script function if __name__ == "__main__": # Parse arguments. parser = argparse.ArgumentParser( formatter_class=argparse.RawDescriptionHelpFormatter, prog='pa-savedata', epilog=desc3) parser.add_argument('configFilePath', help='path to configuration file', action='store', default=None) usage = parser.format_usage() parser.description = desc1 + ' ' + usage + desc2 parser.usage = argparse.SUPPRESS args = parser.parse_args() # Get the probabilistic_annotation section from the configuration file. config = get_config(args.configFilePath) # Create a DataParser object for working with the static database files. dataParser = DataParser(config) # Store the static database files in Shock. paClient = ProbabilisticAnnotation(url=get_url()) dataParser.storeDatabaseFiles(paClient._headers['AUTHORIZATION']) exit(0)
def setUp(self): self.cmd = os.path.join(os.environ["KB_TOP"], "bin/pa-url") self.config = get_config(os.environ["KB_TEST_CONFIG"])