def _install_additional_data(genomes, config):
download_dbsnp(genomes, BROAD_BUNDLE_VERSION, DBSNP_VERSION)
if config.get("install_liftover", False):
lift_over_genomes = [g.ucsc_name() for (_, _, g) in genomes if g.ucsc_name()]
_data_liftover(lift_over_genomes)
if config.get("install_uniref", False):
_data_uniref()
def _install_additional_data(genomes, genome_indexes, config):
download_dbsnp(genomes, BROAD_BUNDLE_VERSION, DBSNP_VERSION)
for custom in (config.get("custom") or []):
_prep_custom_genome(custom, genomes, genome_indexes, env)
if config.get("install_liftover", False):
lift_over_genomes = [g.ucsc_name() for (_, _, g) in genomes if g.ucsc_name()]
_data_liftover(lift_over_genomes)
if config.get("install_uniref", False):
_data_uniref()
def _install_additional_data(genomes, genome_indexes, config):
download_dbsnp(genomes, BROAD_BUNDLE_VERSION, DBSNP_VERSION)
for custom in (config.get("custom") or []):
_prep_custom_genome(custom, genomes, genome_indexes, env)
if config.get("install_liftover", False):
lift_over_genomes = [g.ucsc_name() for (_, _, g) in genomes if g.ucsc_name()]
_data_liftover(lift_over_genomes)
if config.get("install_uniref", False):
_data_uniref()
def _install_additional_data(genomes, config):
download_dbsnp(genomes, BROAD_BUNDLE_VERSION, DBSNP_VERSION)
if config.get("install_liftover", False):
lift_over_genomes = [
g.ucsc_name() for (_, _, g) in genomes if g.ucsc_name()
]
_data_liftover(lift_over_genomes)
if config.get("install_uniref", False):
_data_uniref()