Python download_dbsnp示例

示例#1

文件： data_fabfile.py 项目： leebryanp/gists

def _install_additional_data(genomes, config):
    download_dbsnp(genomes, BROAD_BUNDLE_VERSION, DBSNP_VERSION)
    if config.get("install_liftover", False):
        lift_over_genomes = [g.ucsc_name() for (_, _, g) in genomes if g.ucsc_name()]
        _data_liftover(lift_over_genomes)
    if config.get("install_uniref", False):
        _data_uniref()

示例#2

文件： genomes.py 项目： colorshifter/cloudbiolinux

def _install_additional_data(genomes, genome_indexes, config):
    download_dbsnp(genomes, BROAD_BUNDLE_VERSION, DBSNP_VERSION)
    for custom in (config.get("custom") or []):
        _prep_custom_genome(custom, genomes, genome_indexes, env)
    if config.get("install_liftover", False):
        lift_over_genomes = [g.ucsc_name() for (_, _, g) in genomes if g.ucsc_name()]
        _data_liftover(lift_over_genomes)
    if config.get("install_uniref", False):
        _data_uniref()

示例#3

文件： genomes.py 项目： averagehat/cloudbiolinux

def _install_additional_data(genomes, genome_indexes, config):
    download_dbsnp(genomes, BROAD_BUNDLE_VERSION, DBSNP_VERSION)
    for custom in (config.get("custom") or []):
        _prep_custom_genome(custom, genomes, genome_indexes, env)
    if config.get("install_liftover", False):
        lift_over_genomes = [g.ucsc_name() for (_, _, g) in genomes if g.ucsc_name()]
        _data_liftover(lift_over_genomes)
    if config.get("install_uniref", False):
        _data_uniref()

示例#4

文件： data_fabfile.py 项目： leebryanp/gists

def _install_additional_data(genomes, config):
    download_dbsnp(genomes, BROAD_BUNDLE_VERSION, DBSNP_VERSION)
    if config.get("install_liftover", False):
        lift_over_genomes = [
            g.ucsc_name() for (_, _, g) in genomes if g.ucsc_name()
        ]
        _data_liftover(lift_over_genomes)
    if config.get("install_uniref", False):
        _data_uniref()