def l1000cds2_upload():
'''
l1000cds2 is using a old version of clustergrammer.py
'''
import requests
import json
from clustergrammer_old import Network
from pymongo import MongoClient
from bson.objectid import ObjectId
from flask import request
l1000cds2 = json.loads( request.form.get('signatures') )
net = Network()
net.load_l1000cds2(l1000cds2)
cutoff_comp = 0
min_num_comp = 2
net.cluster_row_and_col(dist_type='cosine', dendro=True)
net.dat['node_info']['row']['ini'] = net.sort_rank_node_values('row')
net.dat['node_info']['col']['ini'] = net.sort_rank_node_values('col')
net.viz = {}
net.viz['row_nodes'] = []
net.viz['col_nodes'] = []
net.viz['links'] = []
net.viz_json()
export_dict = {}
export_dict['name'] = 'l1000cds2'
export_dict['dat'] = net.export_net_json('dat')
export_dict['viz'] = net.viz
export_dict['_id'] = ObjectId(l1000cds2['_id'])
client = MongoClient(mongo_address)
db = client.clustergrammer
tmp = db.networks.find_one({'_id': ObjectId(l1000cds2['_id']) })
if tmp is None:
tmp_id = db.networks.insert( export_dict )
client.close()
return redirect('/clustergrammer/l1000cds2/'+l1000cds2['_id'])
def l1000cds2_upload():
'''
l1000cds2 is using a old version of clustergrammer.py
'''
import requests
import json
from clustergrammer_old import Network
from pymongo import MongoClient
from bson.objectid import ObjectId
from flask import request
l1000cds2 = json.loads(request.form.get('signatures'))
net = Network()
net.load_l1000cds2(l1000cds2)
cutoff_comp = 0
min_num_comp = 2
net.cluster_row_and_col(dist_type='cosine', dendro=True)
net.dat['node_info']['row']['ini'] = net.sort_rank_node_values('row')
net.dat['node_info']['col']['ini'] = net.sort_rank_node_values('col')
net.viz = {}
net.viz['row_nodes'] = []
net.viz['col_nodes'] = []
net.viz['links'] = []
net.viz_json()
export_dict = {}
export_dict['name'] = 'l1000cds2'
export_dict['dat'] = net.export_net_json('dat')
export_dict['viz'] = net.viz
export_dict['_id'] = ObjectId(l1000cds2['_id'])
client = MongoClient(mongo_address)
db = client.clustergrammer
tmp = db.networks.find_one({'_id': ObjectId(l1000cds2['_id'])})
if tmp is None:
tmp_id = db.networks.insert(export_dict)
client.close()
return redirect('/clustergrammer/l1000cds2/' + l1000cds2['_id'])
