def __init__(self):
databases = Databases()
self.signature_modules = databases.signature_modules
self.m2def = databases.m2def()
self.modules = databases.m()
self.ko_output = "module_completeness.tsv"
self.module_paths = "module_paths.tsv"
self.aggregate_output = "aggregate_output.tsv"
def __init__(self):
d = Databases()
self.m2def = d.m2def()
self.m2c = d.m2c()
self.c = d.c()
self.m = d.m()
self.c2m = d.c2m()
self.signature_modules = d.signature_modules
self.output_file = 'linkages.tsv'
def __init__(self):
databases = Databases()
self.signature_modules = databases.signature_modules
self.m2def = databases.m2def()
self.m = databases.m()
