def affiliation(self):
return (xml_get_text_or_none(
self._xmlroot,
'/PubmedArticleSet/PubmedArticle/MedlineCitation/Article/AuthorList//Affiliation'
) or xml_get_text_or_none(
self._xmlroot,
'/PubmedArticleSet/PubmedArticle/MedlineCitation/MedlineJournalInfo/Country'
))
def jrnl(self):
return (xml_get_text_or_none(
self._xmlroot,
'/PubmedArticleSet/PubmedArticle/MedlineCitation/Article/Journal/ISOAbbreviation'
) or xml_get_text_or_none(
self._xmlroot,
'/PubmedArticleSetPubmedArticle/MedlineCitation/Article/Journal/Title'
))
return j
def year(self):
return (xml_get_text_or_none(
self._xmlroot,
'/PubmedArticleSet/PubmedArticle/MedlineCitation/Article/Journal/JournalIssue/PubDate/Year'
) or xml_get_text(
self._xmlroot,
'/PubmedArticleSet/PubmedArticle/MedlineCitation/Article/Journal/JournalIssue/PubDate/MedlineDate'
)[0:4])
def gene_id(self):
return int(xml_get_text_or_none(self._xmlroot,'/Entrezgene-Set/Entrezgene/Entrezgene_track-info/Gene-track/Gene-track_geneid'))
def summary(self):
return xml_get_text_or_none(
self._xmlroot, '/Entrezgene-Set/Entrezgene/Entrezgene_summary')
def hgnc(self):
return xml_get_text_or_none(
self._xmlroot,
'/Entrezgene-Set/Entrezgene/Entrezgene_gene/Gene-ref/Gene-ref_locus'
)
def description(self):
return xml_get_text_or_none(
self._xmlroot,
'/Entrezgene-Set/Entrezgene/Entrezgene_gene/Gene-ref/Gene-ref_desc'
)
def pmc(self):
pmc = xml_get_text_or_none(self._xml_root, 'PubmedData/ArticleIdList/ArticleId[@IdType="pmc"]')
return None if pmc is None else pmc[3:]
def pmc(self):
return xml_get_text_or_none(self._xml_root, 'front/article-meta/article-id[@pub-id-type="pmc"]')
def title(self):
return xml_get_text_or_none(
self._xmlroot,
'/PubmedArticleSet/PubmedArticle/MedlineCitation/Article/ArticleTitle'
)
def pmid(self):
return xml_get_text_or_none(
self._xmlroot,
'/PubmedArticleSet/PubmedArticle/MedlineCitation/PMID')
def pages(self):
return (xml_get_text_or_none(
self._xmlroot,
'/PubmedArticleSet/PubmedArticle/MedlineCitation/Article/Pagination/MedlinePgn'
))
def doi(self):
return xml_get_text_or_none(
self._xmlroot,
'/PubmedArticleSet/PubmedData/ArticleIdList/ArticleId[@IdType="doi"]'
)
def abstract(self):
return xml_get_text_or_none(
self._xmlroot,
'/PubmedArticleSet/PubmedArticle/MedlineCitation/Article/Abstract/AbstractText'
)
def country(self):
return xml_get_text_or_none(
self._xmlroot,
'/PubmedArticleSet/PubmedArticle/MedlineCitation/MedlineJournalInfo/Country'
)
def maploc(self):
return xml_get_text_or_none(self._xmlroot,'/Entrezgene-Set/Entrezgene/Entrezgene_gene/Gene-ref/Gene-ref_maploc')
def pii(self):
return xml_get_text_or_none(
self._xml_root,
'PubmedData/ArticleIdList/ArticleId[@IdType="pii"]')
def volume(self):
return xml_get_text_or_none(
self._xmlroot,
'/PubmedArticleSet/PubmedArticle/MedlineCitation/Article/Journal/JournalIssue/Volume'
)
def country(self):
return xml_get_text_or_none(self._xmlroot, '/PubmedArticleSet/PubmedArticle/MedlineCitation/MedlineJournalInfo/Country')
def abstract(self):
return xml_get_text_or_none(self._xmlroot,'/PubmedArticleSet/PubmedArticle/MedlineCitation/Article/Abstract/AbstractText')
def pii(self):
return xml_get_text_or_none(self._xml_root, 'PubmedData/ArticleIdList/ArticleId[@IdType="pii"]')
def doi(self):
return xml_get_text_or_none(self._xmlroot,'/PubmedArticleSet/PubmedData/ArticleIdList/ArticleId[@IdType="doi"]')
def pmc(self):
return xml_get_text_or_none(
self._xml_root,
'front/article-meta/article-id[@pub-id-type="pmc"]')
def jrnl(self):
return ( xml_get_text_or_none(self._xmlroot,'/PubmedArticleSet/PubmedArticle/MedlineCitation/Article/Journal/ISOAbbreviation')
or xml_get_text_or_none(self._xmlroot,'/PubmedArticleSetPubmedArticle/MedlineCitation/Article/Journal/Title') )
return j
def gene_id(self):
return int(
xml_get_text_or_none(
self._xmlroot,
'/Entrezgene-Set/Entrezgene/Entrezgene_track-info/Gene-track/Gene-track_geneid'
))
def pages(self):
return( xml_get_text_or_none(self._xmlroot,'/PubmedArticleSet/PubmedArticle/MedlineCitation/Article/Pagination/MedlinePgn') )
def maploc(self):
return xml_get_text_or_none(
self._xmlroot,
'/Entrezgene-Set/Entrezgene/Entrezgene_gene/Gene-ref/Gene-ref_maploc'
)
def pmid(self):
return xml_get_text_or_none(self._xmlroot,'/PubmedArticleSet/PubmedArticle/MedlineCitation/PMID')
def description(self):
return xml_get_text_or_none(self._xmlroot,'/Entrezgene-Set/Entrezgene/Entrezgene_gene/Gene-ref/Gene-ref_desc')
def title(self):
return xml_get_text_or_none(self._xmlroot,'/PubmedArticleSet/PubmedArticle/MedlineCitation/Article/ArticleTitle')
def hgnc(self):
return xml_get_text_or_none(self._xmlroot,'/Entrezgene-Set/Entrezgene/Entrezgene_gene/Gene-ref/Gene-ref_locus')
def volume(self):
return xml_get_text_or_none(self._xmlroot,'/PubmedArticleSet/PubmedArticle/MedlineCitation/Article/Journal/JournalIssue/Volume')
def summary(self):
return xml_get_text_or_none(self._xmlroot,'/Entrezgene-Set/Entrezgene/Entrezgene_summary')
def year(self):
return (
xml_get_text_or_none(self._xmlroot,'/PubmedArticleSet/PubmedArticle/MedlineCitation/Article/Journal/JournalIssue/PubDate/Year')
or xml_get_text(self._xmlroot,'/PubmedArticleSet/PubmedArticle/MedlineCitation/Article/Journal/JournalIssue/PubDate/MedlineDate')[0:4]
)
def pmc(self):
pmc = xml_get_text_or_none(
self._xml_root,
'PubmedData/ArticleIdList/ArticleId[@IdType="pmc"]')
return None if pmc is None else pmc[3:]
def affiliation(self):
return (
xml_get_text_or_none(self._xmlroot,'/PubmedArticleSet/PubmedArticle/MedlineCitation/Article/AuthorList//Affiliation')
or xml_get_text_or_none(self._xmlroot, '/PubmedArticleSet/PubmedArticle/MedlineCitation/MedlineJournalInfo/Country')
)
