def undelete_repository( self, trans, **kwd ):
params = util.Params( kwd )
message = util.restore_text( params.get( 'message', '' ) )
status = params.get( 'status', 'done' )
id = kwd.get( 'id', None )
if id:
# Undeleting multiple items is currently not allowed (allow_multiple=False), so there will only be 1 id.
ids = util.listify( id )
count = 0
undeleted_repositories = ""
for repository_id in ids:
repository = suc.get_repository_in_tool_shed( trans, repository_id )
if repository.deleted:
repository.deleted = False
trans.sa_session.add( repository )
trans.sa_session.flush()
count += 1
undeleted_repositories += " %s" % repository.name
if count:
message = "Undeleted %d %s: %s" % ( count, inflector.cond_plural( count, "repository" ), undeleted_repositories )
else:
message = "No selected repositories were marked deleted, so they could not be undeleted."
else:
message = "No repository ids received for undeleting."
status = 'error'
trans.response.send_redirect( web.url_for( controller='admin',
action='browse_repositories',
message=util.sanitize_text( message ),
status='done' ) )
def manage_repository_reviews_of_revision(self, trans, **kwd):
# The value of the received id is the encoded repository id.
params = util.Params(kwd)
message = util.restore_text(params.get('message', ''))
status = params.get('status', 'done')
repository_id = kwd.get('id', None)
changeset_revision = kwd.get('changeset_revision', None)
repository = suc.get_repository_in_tool_shed(trans, repository_id)
repo_dir = repository.repo_path(trans.app)
repo = hg.repository(suc.get_configured_ui(), repo_dir)
installable = changeset_revision in [
metadata_revision.changeset_revision
for metadata_revision in repository.metadata_revisions
]
rev, changeset_revision_label = suc.get_rev_label_from_changeset_revision(
repo, changeset_revision)
reviews = suc.get_reviews_by_repository_id_changeset_revision(
trans, repository_id, changeset_revision)
return trans.fill_template(
'/webapps/community/repository_review/reviews_of_changeset_revision.mako',
repository=repository,
changeset_revision=changeset_revision,
changeset_revision_label=changeset_revision_label,
reviews=reviews,
installable=installable,
message=message,
status=status)
def undelete_repository(self, trans, **kwd):
params = util.Params(kwd)
message = util.restore_text(params.get('message', ''))
status = params.get('status', 'done')
id = kwd.get('id', None)
if id:
# Undeleting multiple items is currently not allowed (allow_multiple=False), so there will only be 1 id.
ids = util.listify(id)
count = 0
undeleted_repositories = ""
for repository_id in ids:
repository = suc.get_repository_in_tool_shed(
trans, repository_id)
if repository.deleted:
repository.deleted = False
trans.sa_session.add(repository)
trans.sa_session.flush()
count += 1
undeleted_repositories += " %s" % repository.name
if count:
message = "Undeleted %d %s: %s" % (
count, inflector.cond_plural(
count, "repository"), undeleted_repositories)
else:
message = "No selected repositories were marked deleted, so they could not be undeleted."
else:
message = "No repository ids received for undeleting."
status = 'error'
trans.response.send_redirect(
web.url_for(controller='admin',
action='browse_repositories',
message=util.sanitize_text(message),
status='done'))
def manage_repository_reviews(self, trans, mine=False, **kwd):
# The value of the received id is the encoded repository id.
params = util.Params(kwd)
message = util.restore_text(params.get('message', ''))
status = params.get('status', 'done')
repository_id = kwd.get('id', None)
if repository_id:
repository = suc.get_repository_in_tool_shed(trans, repository_id)
repo_dir = repository.repo_path(trans.app)
repo = hg.repository(suc.get_configured_ui(), repo_dir)
metadata_revision_hashes = [
metadata_revision.changeset_revision
for metadata_revision in repository.metadata_revisions
]
reviewed_revision_hashes = [
review.changeset_revision for review in repository.reviews
]
reviews_dict = odict()
for changeset in suc.get_reversed_changelog_changesets(repo):
ctx = repo.changectx(changeset)
changeset_revision = str(ctx)
if changeset_revision in metadata_revision_hashes or changeset_revision in reviewed_revision_hashes:
rev, changeset_revision_label = suc.get_rev_label_from_changeset_revision(
repo, changeset_revision)
if changeset_revision in reviewed_revision_hashes:
# Find the review for this changeset_revision
repository_reviews = suc.get_reviews_by_repository_id_changeset_revision(
trans, repository_id, changeset_revision)
# Determine if the current user can add a review to this revision.
can_add_review = trans.user not in [
repository_review.user
for repository_review in repository_reviews
]
repository_metadata = suc.get_repository_metadata_by_changeset_revision(
trans, repository_id, changeset_revision)
if repository_metadata:
repository_metadata_reviews = util.listify(
repository_metadata.reviews)
else:
repository_metadata_reviews = []
else:
repository_reviews = []
repository_metadata_reviews = []
can_add_review = True
installable = changeset_revision in metadata_revision_hashes
revision_dict = dict(
changeset_revision_label=changeset_revision_label,
repository_reviews=repository_reviews,
repository_metadata_reviews=repository_metadata_reviews,
installable=installable,
can_add_review=can_add_review)
reviews_dict[changeset_revision] = revision_dict
return trans.fill_template(
'/webapps/community/repository_review/reviews_of_repository.mako',
repository=repository,
reviews_dict=reviews_dict,
mine=mine,
message=message,
status=status)
def view_or_manage_repository( self, trans, **kwd ):
repository = suc.get_repository_in_tool_shed( trans, kwd[ 'id' ] )
if trans.user_is_admin() or repository.user == trans.user:
return trans.response.send_redirect( web.url_for( controller='repository',
action='manage_repository',
cntrller='repository_review',
**kwd ) )
else:
return trans.response.send_redirect( web.url_for( controller='repository',
action='view_repository',
cntrller='repository_review',
**kwd ) )
def view_or_manage_repository(self, trans, **kwd):
repository = suc.get_repository_in_tool_shed(trans, kwd['id'])
if trans.user_is_admin() or repository.user == trans.user:
return trans.response.send_redirect(
web.url_for(controller='repository',
action='manage_repository',
cntrller='repository_review',
**kwd))
else:
return trans.response.send_redirect(
web.url_for(controller='repository',
action='view_repository',
cntrller='repository_review',
**kwd))
def select_previous_review( self, trans, **kwd ):
# The value of the received id is the encoded repository id.
params = util.Params( kwd )
message = util.restore_text( params.get( 'message', '' ) )
status = params.get( 'status', 'done' )
repository = suc.get_repository_in_tool_shed( trans, kwd[ 'id' ] )
changeset_revision = kwd.get( 'changeset_revision', None )
repo = hg.repository( suc.get_configured_ui(), repository.repo_path( trans.app ) )
previous_reviews_dict = suc.get_previous_repository_reviews( trans, repository, changeset_revision )
rev, changeset_revision_label = suc.get_rev_label_from_changeset_revision( repo, changeset_revision )
return trans.fill_template( '/webapps/community/repository_review/select_previous_review.mako',
repository=repository,
changeset_revision=changeset_revision,
changeset_revision_label=changeset_revision_label,
previous_reviews_dict=previous_reviews_dict,
message=message,
status=status )
def manage_repository_reviews( self, trans, mine=False, **kwd ):
# The value of the received id is the encoded repository id.
params = util.Params( kwd )
message = util.restore_text( params.get( 'message', '' ) )
status = params.get( 'status', 'done' )
repository_id = kwd.get( 'id', None )
if repository_id:
repository = suc.get_repository_in_tool_shed( trans, repository_id )
repo_dir = repository.repo_path( trans.app )
repo = hg.repository( suc.get_configured_ui(), repo_dir )
metadata_revision_hashes = [ metadata_revision.changeset_revision for metadata_revision in repository.metadata_revisions ]
reviewed_revision_hashes = [ review.changeset_revision for review in repository.reviews ]
reviews_dict = odict()
for changeset in suc.get_reversed_changelog_changesets( repo ):
ctx = repo.changectx( changeset )
changeset_revision = str( ctx )
if changeset_revision in metadata_revision_hashes or changeset_revision in reviewed_revision_hashes:
rev, changeset_revision_label = suc.get_rev_label_from_changeset_revision( repo, changeset_revision )
if changeset_revision in reviewed_revision_hashes:
# Find the review for this changeset_revision
repository_reviews = suc.get_reviews_by_repository_id_changeset_revision( trans, repository_id, changeset_revision )
# Determine if the current user can add a review to this revision.
can_add_review = trans.user not in [ repository_review.user for repository_review in repository_reviews ]
repository_metadata = suc.get_repository_metadata_by_changeset_revision( trans, repository_id, changeset_revision )
if repository_metadata:
repository_metadata_reviews = util.listify( repository_metadata.reviews )
else:
repository_metadata_reviews = []
else:
repository_reviews = []
repository_metadata_reviews = []
can_add_review = True
installable = changeset_revision in metadata_revision_hashes
revision_dict = dict( changeset_revision_label=changeset_revision_label,
repository_reviews=repository_reviews,
repository_metadata_reviews=repository_metadata_reviews,
installable=installable,
can_add_review=can_add_review )
reviews_dict[ changeset_revision ] = revision_dict
return trans.fill_template( '/webapps/community/repository_review/reviews_of_repository.mako',
repository=repository,
reviews_dict=reviews_dict,
mine=mine,
message=message,
status=status )
def manage_repository_reviews_of_revision( self, trans, **kwd ):
# The value of the received id is the encoded repository id.
params = util.Params( kwd )
message = util.restore_text( params.get( 'message', '' ) )
status = params.get( 'status', 'done' )
repository_id = kwd.get( 'id', None )
changeset_revision = kwd.get( 'changeset_revision', None )
repository = suc.get_repository_in_tool_shed( trans, repository_id )
repo_dir = repository.repo_path( trans.app )
repo = hg.repository( suc.get_configured_ui(), repo_dir )
installable = changeset_revision in [ metadata_revision.changeset_revision for metadata_revision in repository.metadata_revisions ]
rev, changeset_revision_label = suc.get_rev_label_from_changeset_revision( repo, changeset_revision )
reviews = suc.get_reviews_by_repository_id_changeset_revision( trans, repository_id, changeset_revision )
return trans.fill_template( '/webapps/community/repository_review/reviews_of_changeset_revision.mako',
repository=repository,
changeset_revision=changeset_revision,
changeset_revision_label=changeset_revision_label,
reviews=reviews,
installable=installable,
message=message,
status=status )
def select_previous_review(self, trans, **kwd):
# The value of the received id is the encoded repository id.
params = util.Params(kwd)
message = util.restore_text(params.get('message', ''))
status = params.get('status', 'done')
repository = suc.get_repository_in_tool_shed(trans, kwd['id'])
changeset_revision = kwd.get('changeset_revision', None)
repo = hg.repository(suc.get_configured_ui(),
repository.repo_path(trans.app))
previous_reviews_dict = suc.get_previous_repository_reviews(
trans, repository, changeset_revision)
rev, changeset_revision_label = suc.get_rev_label_from_changeset_revision(
repo, changeset_revision)
return trans.fill_template(
'/webapps/community/repository_review/select_previous_review.mako',
repository=repository,
changeset_revision=changeset_revision,
changeset_revision_label=changeset_revision_label,
previous_reviews_dict=previous_reviews_dict,
message=message,
status=status)
def create_review( self, trans, **kwd ):
# The value of the received id is the encoded repository id.
params = util.Params( kwd )
message = util.restore_text( params.get( 'message', '' ) )
status = params.get( 'status', 'done' )
repository_id = kwd.get( 'id', None )
changeset_revision = kwd.get( 'changeset_revision', None )
previous_review_id = kwd.get( 'previous_review_id', None )
create_without_copying = 'create_without_copying' in kwd
if repository_id:
if changeset_revision:
# Make sure there is not already a review of the revision by the user.
repository = suc.get_repository_in_tool_shed( trans, repository_id )
if suc.get_review_by_repository_id_changeset_revision_user_id( trans=trans,
repository_id=repository_id,
changeset_revision=changeset_revision,
user_id=trans.security.encode_id( trans.user.id ) ):
message = "You have already created a review for revision <b>%s</b> of repository <b>%s</b>." % ( changeset_revision, repository.name )
status = "error"
else:
# See if there are any reviews for previous changeset revisions that the user can copy.
if not create_without_copying and not previous_review_id and suc.has_previous_repository_reviews( trans, repository, changeset_revision ):
return trans.response.send_redirect( web.url_for( controller='repository_review',
action='select_previous_review',
**kwd ) )
# A review can be initially performed only on an installable revision of a repository, so make sure we have metadata associated
# with the received changeset_revision.
repository_metadata = suc.get_repository_metadata_by_changeset_revision( trans, repository_id, changeset_revision )
if repository_metadata:
metadata = repository_metadata.metadata
if metadata:
review = trans.app.model.RepositoryReview( repository_id=repository_metadata.repository_id,
changeset_revision=changeset_revision,
user_id=trans.user.id,
rating=None,
deleted=False )
trans.sa_session.add( review )
trans.sa_session.flush()
if previous_review_id:
review_to_copy = suc.get_review( trans, previous_review_id )
self.copy_review( trans, review_to_copy, review )
review_id = trans.security.encode_id( review.id )
message = "Begin your review of revision <b>%s</b> of repository <b>%s</b>." \
% ( changeset_revision, repository.name )
status = 'done'
trans.response.send_redirect( web.url_for( controller='repository_review',
action='edit_review',
id=review_id,
message=message,
status=status ) )
else:
message = "A new review cannot be created for revision <b>%s</b> of repository <b>%s</b>. Select a valid revision and try again." \
% ( changeset_revision, repository.name )
kwd[ 'message' ] = message
kwd[ 'status' ] = 'error'
else:
return trans.response.send_redirect( web.url_for( controller='repository_review',
action='manage_repository_reviews',
**kwd ) )
return trans.response.send_redirect( web.url_for( controller='repository_review',
action='view_or_manage_repository',
**kwd ) )
def upload(self, trans, **kwd):
params = util.Params(kwd)
message = util.restore_text(params.get('message', ''))
status = params.get('status', 'done')
commit_message = util.restore_text(
params.get('commit_message', 'Uploaded'))
category_ids = util.listify(params.get('category_id', ''))
categories = suc.get_categories(trans)
repository_id = params.get('repository_id', '')
repository = suc.get_repository_in_tool_shed(trans, repository_id)
repo_dir = repository.repo_path(trans.app)
repo = hg.repository(suc.get_configured_ui(), repo_dir)
uncompress_file = util.string_as_bool(
params.get('uncompress_file', 'true'))
remove_repo_files_not_in_tar = util.string_as_bool(
params.get('remove_repo_files_not_in_tar', 'true'))
uploaded_file = None
upload_point = self.__get_upload_point(repository, **kwd)
tip = repository.tip(trans.app)
file_data = params.get('file_data', '')
url = params.get('url', '')
# Part of the upload process is sending email notification to those that have registered to
# receive them. One scenario occurs when the first change set is produced for the repository.
# See the suc.handle_email_alerts() method for the definition of the scenarios.
new_repo_alert = repository.is_new(trans.app)
uploaded_directory = None
if params.get('upload_button', False):
if file_data == '' and url == '':
message = 'No files were entered on the upload form.'
status = 'error'
uploaded_file = None
elif url and url.startswith('hg'):
# Use mercurial clone to fetch repository, contents will then be copied over.
uploaded_directory = tempfile.mkdtemp()
repo_url = 'http%s' % url[len('hg'):]
repo_url = repo_url.encode('ascii', 'replace')
commands.clone(suc.get_configured_ui(), repo_url,
uploaded_directory)
elif url:
valid_url = True
try:
stream = urllib.urlopen(url)
except Exception, e:
valid_url = False
message = 'Error uploading file via http: %s' % str(e)
status = 'error'
uploaded_file = None
if valid_url:
fd, uploaded_file_name = tempfile.mkstemp()
uploaded_file = open(uploaded_file_name, 'wb')
while 1:
chunk = stream.read(CHUNK_SIZE)
if not chunk:
break
uploaded_file.write(chunk)
uploaded_file.flush()
uploaded_file_filename = url.split('/')[-1]
isempty = os.path.getsize(
os.path.abspath(uploaded_file_name)) == 0
elif file_data not in ('', None):
uploaded_file = file_data.file
uploaded_file_name = uploaded_file.name
uploaded_file_filename = os.path.split(file_data.filename)[-1]
isempty = os.path.getsize(
os.path.abspath(uploaded_file_name)) == 0
if uploaded_file or uploaded_directory:
ok = True
isgzip = False
isbz2 = False
if uploaded_file:
if uncompress_file:
isgzip = checkers.is_gzip(uploaded_file_name)
if not isgzip:
isbz2 = checkers.is_bz2(uploaded_file_name)
if isempty:
tar = None
istar = False
else:
# Determine what we have - a single file or an archive
try:
if (isgzip or isbz2) and uncompress_file:
# Open for reading with transparent compression.
tar = tarfile.open(uploaded_file_name, 'r:*')
else:
tar = tarfile.open(uploaded_file_name)
istar = True
except tarfile.ReadError, e:
tar = None
istar = False
else:
# Uploaded directory
istar = False
if istar:
ok, message, files_to_remove, content_alert_str, undesirable_dirs_removed, undesirable_files_removed = \
self.upload_tar( trans, repository, tar, uploaded_file, upload_point, remove_repo_files_not_in_tar, commit_message, new_repo_alert )
elif uploaded_directory:
ok,message, files_to_remove, content_alert_str, undesirable_dirs_removed, undesirable_files_removed = \
self.upload_directory( trans, repository, uploaded_directory, upload_point, remove_repo_files_not_in_tar, commit_message, new_repo_alert )
else:
if (isgzip or isbz2) and uncompress_file:
uploaded_file_filename = self.uncompress(
repository, uploaded_file_name,
uploaded_file_filename, isgzip, isbz2)
if upload_point is not None:
full_path = os.path.abspath(
os.path.join(repo_dir, upload_point,
uploaded_file_filename))
else:
full_path = os.path.abspath(
os.path.join(repo_dir, uploaded_file_filename))
# Move the uploaded file to the load_point within the repository hierarchy.
shutil.move(uploaded_file_name, full_path)
# See if any admin users have chosen to receive email alerts when a repository is
# updated. If so, check every uploaded file to ensure content is appropriate.
check_contents = suc.check_file_contents(trans)
if check_contents and os.path.isfile(full_path):
content_alert_str = self.__check_file_content(
full_path)
else:
content_alert_str = ''
commands.add(repo.ui, repo, full_path)
# Convert from unicode to prevent "TypeError: array item must be char"
full_path = full_path.encode('ascii', 'replace')
commands.commit(repo.ui,
repo,
full_path,
user=trans.user.username,
message=commit_message)
if full_path.endswith('tool_data_table_conf.xml.sample'):
# Handle the special case where a tool_data_table_conf.xml.sample file is being uploaded by parsing the file and adding new entries
# to the in-memory trans.app.tool_data_tables dictionary.
error, error_message = suc.handle_sample_tool_data_table_conf_file(
trans.app, full_path)
if error:
message = '%s<br/>%s' % (message, error_message)
# See if the content of the change set was valid.
admin_only = len(repository.downloadable_revisions) != 1
suc.handle_email_alerts(
trans,
repository,
content_alert_str=content_alert_str,
new_repo_alert=new_repo_alert,
admin_only=admin_only)
if ok:
# Update the repository files for browsing.
suc.update_repository(repo)
# Get the new repository tip.
if tip == repository.tip(trans.app):
message = 'No changes to repository. '
status = 'warning'
else:
if (isgzip or isbz2) and uncompress_file:
uncompress_str = ' uncompressed and '
else:
uncompress_str = ' '
if uploaded_directory:
source_type = "repository"
source = url
else:
source_type = "file"
source = uploaded_file_filename
message = "The %s '%s' has been successfully%suploaded to the repository. " % (
source_type, source, uncompress_str)
if istar and (undesirable_dirs_removed
or undesirable_files_removed):
items_removed = undesirable_dirs_removed + undesirable_files_removed
message += " %d undesirable items (.hg .svn .git directories, .DS_Store, hgrc files, etc) were removed from the archive. " % items_removed
if istar and remove_repo_files_not_in_tar and files_to_remove:
if upload_point is not None:
message += " %d files were removed from the repository relative to the selected upload point '%s'. " % (
len(files_to_remove), upload_point)
else:
message += " %d files were removed from the repository root. " % len(
files_to_remove)
kwd['message'] = message
suc.set_repository_metadata_due_to_new_tip(
trans,
repository,
content_alert_str=content_alert_str,
**kwd)
# Provide a warning message if a tool_dependencies.xml file is provided, but tool dependencies weren't loaded due to a requirement tag mismatch
# or some other problem.
if suc.get_config_from_disk('tool_dependencies.xml',
repo_dir):
if repository.metadata_revisions:
# A repository's metadata revisions are order descending by update_time, so the zeroth revision will be the tip just after an upload.
metadata_dict = repository.metadata_revisions[
0].metadata
else:
metadata_dict = {}
if suc.has_orphan_tool_dependencies_in_tool_shed(
metadata_dict):
message += 'Name, version and type from a tool requirement tag does not match the information in the "tool_dependencies.xml file", '
message += 'so one or more of the defined tool dependencies are considered orphans within this repository.'
status = 'warning'
# Reset the tool_data_tables by loading the empty tool_data_table_conf.xml file.
suc.reset_tool_data_tables(trans.app)
trans.response.send_redirect(
web.url_for(controller='repository',
action='browse_repository',
id=repository_id,
commit_message='Deleted selected files',
message=message,
status=status))
else:
status = 'error'
# Reset the tool_data_tables by loading the empty tool_data_table_conf.xml file.
suc.reset_tool_data_tables(trans.app)
def browse_repositories( self, trans, **kwd ):
# We add params to the keyword dict in this method in order to rename the param
# with an "f-" prefix, simulating filtering by clicking a search link. We have
# to take this approach because the "-" character is illegal in HTTP requests.
if 'operation' in kwd:
operation = kwd['operation'].lower()
if operation == "view_or_manage_repository":
return trans.response.send_redirect( web.url_for( controller='repository',
action='browse_repositories',
**kwd ) )
elif operation == "edit_repository":
return trans.response.send_redirect( web.url_for( controller='repository',
action='edit_repository',
**kwd ) )
elif operation == "repositories_by_user":
# Eliminate the current filters if any exist.
for k, v in kwd.items():
if k.startswith( 'f-' ):
del kwd[ k ]
if 'user_id' in kwd:
user = suc.get_user( trans, kwd[ 'user_id' ] )
kwd[ 'f-email' ] = user.email
del kwd[ 'user_id' ]
else:
# The received id is the repository id, so we need to get the id of the user
# that uploaded the repository.
repository_id = kwd.get( 'id', None )
repository = suc.get_repository_in_tool_shed( trans, repository_id )
kwd[ 'f-email' ] = repository.user.email
elif operation == "repositories_by_category":
# Eliminate the current filters if any exist.
for k, v in kwd.items():
if k.startswith( 'f-' ):
del kwd[ k ]
category_id = kwd.get( 'id', None )
category = suc.get_category( trans, category_id )
kwd[ 'f-Category.name' ] = category.name
elif operation == "receive email alerts":
if kwd[ 'id' ]:
kwd[ 'caller' ] = 'browse_repositories'
return trans.response.send_redirect( web.url_for( controller='repository',
action='set_email_alerts',
**kwd ) )
else:
del kwd[ 'operation' ]
elif operation == 'delete':
return self.delete_repository( trans, **kwd )
elif operation == "undelete":
return self.undelete_repository( trans, **kwd )
# The changeset_revision_select_field in the RepositoryGrid performs a refresh_on_change
# which sends in request parameters like changeset_revison_1, changeset_revision_2, etc. One
# of the many select fields on the grid performed the refresh_on_change, so we loop through
# all of the received values to see which value is not the repository tip. If we find it, we
# know the refresh_on_change occurred, and we have the necessary repository id and change set
# revision to pass on.
for k, v in kwd.items():
changset_revision_str = 'changeset_revision_'
if k.startswith( changset_revision_str ):
repository_id = trans.security.encode_id( int( k.lstrip( changset_revision_str ) ) )
repository = suc.get_repository_in_tool_shed( trans, repository_id )
if repository.tip( trans.app ) != v:
return trans.response.send_redirect( web.url_for( controller='repository',
action='browse_repositories',
operation='view_or_manage_repository',
id=trans.security.encode_id( repository.id ),
changeset_revision=v ) )
# Render the list view
return self.repository_grid( trans, **kwd )
def create_review(self, trans, **kwd):
# The value of the received id is the encoded repository id.
params = util.Params(kwd)
message = util.restore_text(params.get('message', ''))
status = params.get('status', 'done')
repository_id = kwd.get('id', None)
changeset_revision = kwd.get('changeset_revision', None)
previous_review_id = kwd.get('previous_review_id', None)
create_without_copying = 'create_without_copying' in kwd
if repository_id:
if changeset_revision:
# Make sure there is not already a review of the revision by the user.
repository = suc.get_repository_in_tool_shed(
trans, repository_id)
if suc.get_review_by_repository_id_changeset_revision_user_id(
trans=trans,
repository_id=repository_id,
changeset_revision=changeset_revision,
user_id=trans.security.encode_id(trans.user.id)):
message = "You have already created a review for revision <b>%s</b> of repository <b>%s</b>." % (
changeset_revision, repository.name)
status = "error"
else:
# See if there are any reviews for previous changeset revisions that the user can copy.
if not create_without_copying and not previous_review_id and suc.has_previous_repository_reviews(
trans, repository, changeset_revision):
return trans.response.send_redirect(
web.url_for(controller='repository_review',
action='select_previous_review',
**kwd))
# A review can be initially performed only on an installable revision of a repository, so make sure we have metadata associated
# with the received changeset_revision.
repository_metadata = suc.get_repository_metadata_by_changeset_revision(
trans, repository_id, changeset_revision)
if repository_metadata:
metadata = repository_metadata.metadata
if metadata:
review = trans.app.model.RepositoryReview(
repository_id=repository_metadata.
repository_id,
changeset_revision=changeset_revision,
user_id=trans.user.id,
rating=None,
deleted=False)
trans.sa_session.add(review)
trans.sa_session.flush()
if previous_review_id:
review_to_copy = suc.get_review(
trans, previous_review_id)
self.copy_review(trans, review_to_copy, review)
review_id = trans.security.encode_id(review.id)
message = "Begin your review of revision <b>%s</b> of repository <b>%s</b>." \
% ( changeset_revision, repository.name )
status = 'done'
trans.response.send_redirect(
web.url_for(controller='repository_review',
action='edit_review',
id=review_id,
message=message,
status=status))
else:
message = "A new review cannot be created for revision <b>%s</b> of repository <b>%s</b>. Select a valid revision and try again." \
% ( changeset_revision, repository.name )
kwd['message'] = message
kwd['status'] = 'error'
else:
return trans.response.send_redirect(
web.url_for(controller='repository_review',
action='manage_repository_reviews',
**kwd))
return trans.response.send_redirect(
web.url_for(controller='repository_review',
action='view_or_manage_repository',
**kwd))
def upload( self, trans, **kwd ):
params = util.Params( kwd )
message = util.restore_text( params.get( 'message', '' ) )
status = params.get( 'status', 'done' )
commit_message = util.restore_text( params.get( 'commit_message', 'Uploaded' ) )
category_ids = util.listify( params.get( 'category_id', '' ) )
categories = suc.get_categories( trans )
repository_id = params.get( 'repository_id', '' )
repository = suc.get_repository_in_tool_shed( trans, repository_id )
repo_dir = repository.repo_path( trans.app )
repo = hg.repository( suc.get_configured_ui(), repo_dir )
uncompress_file = util.string_as_bool( params.get( 'uncompress_file', 'true' ) )
remove_repo_files_not_in_tar = util.string_as_bool( params.get( 'remove_repo_files_not_in_tar', 'true' ) )
uploaded_file = None
upload_point = self.__get_upload_point( repository, **kwd )
tip = repository.tip( trans.app )
file_data = params.get( 'file_data', '' )
url = params.get( 'url', '' )
# Part of the upload process is sending email notification to those that have registered to
# receive them. One scenario occurs when the first change set is produced for the repository.
# See the suc.handle_email_alerts() method for the definition of the scenarios.
new_repo_alert = repository.is_new( trans.app )
uploaded_directory = None
if params.get( 'upload_button', False ):
if file_data == '' and url == '':
message = 'No files were entered on the upload form.'
status = 'error'
uploaded_file = None
elif url and url.startswith( 'hg' ):
# Use mercurial clone to fetch repository, contents will then be copied over.
uploaded_directory = tempfile.mkdtemp()
repo_url = 'http%s' % url[ len( 'hg' ): ]
repo_url = repo_url.encode( 'ascii', 'replace' )
commands.clone( suc.get_configured_ui(), repo_url, uploaded_directory )
elif url:
valid_url = True
try:
stream = urllib.urlopen( url )
except Exception, e:
valid_url = False
message = 'Error uploading file via http: %s' % str( e )
status = 'error'
uploaded_file = None
if valid_url:
fd, uploaded_file_name = tempfile.mkstemp()
uploaded_file = open( uploaded_file_name, 'wb' )
while 1:
chunk = stream.read( CHUNK_SIZE )
if not chunk:
break
uploaded_file.write( chunk )
uploaded_file.flush()
uploaded_file_filename = url.split( '/' )[ -1 ]
isempty = os.path.getsize( os.path.abspath( uploaded_file_name ) ) == 0
elif file_data not in ( '', None ):
uploaded_file = file_data.file
uploaded_file_name = uploaded_file.name
uploaded_file_filename = os.path.split( file_data.filename )[ -1 ]
isempty = os.path.getsize( os.path.abspath( uploaded_file_name ) ) == 0
if uploaded_file or uploaded_directory:
ok = True
isgzip = False
isbz2 = False
if uploaded_file:
if uncompress_file:
isgzip = checkers.is_gzip( uploaded_file_name )
if not isgzip:
isbz2 = checkers.is_bz2( uploaded_file_name )
if isempty:
tar = None
istar = False
else:
# Determine what we have - a single file or an archive
try:
if ( isgzip or isbz2 ) and uncompress_file:
# Open for reading with transparent compression.
tar = tarfile.open( uploaded_file_name, 'r:*' )
else:
tar = tarfile.open( uploaded_file_name )
istar = True
except tarfile.ReadError, e:
tar = None
istar = False
else:
# Uploaded directory
istar = False
if istar:
ok, message, files_to_remove, content_alert_str, undesirable_dirs_removed, undesirable_files_removed = \
self.upload_tar( trans, repository, tar, uploaded_file, upload_point, remove_repo_files_not_in_tar, commit_message, new_repo_alert )
elif uploaded_directory:
ok,message, files_to_remove, content_alert_str, undesirable_dirs_removed, undesirable_files_removed = \
self.upload_directory( trans, repository, uploaded_directory, upload_point, remove_repo_files_not_in_tar, commit_message, new_repo_alert )
else:
if ( isgzip or isbz2 ) and uncompress_file:
uploaded_file_filename = self.uncompress( repository, uploaded_file_name, uploaded_file_filename, isgzip, isbz2 )
if upload_point is not None:
full_path = os.path.abspath( os.path.join( repo_dir, upload_point, uploaded_file_filename ) )
else:
full_path = os.path.abspath( os.path.join( repo_dir, uploaded_file_filename ) )
# Move the uploaded file to the load_point within the repository hierarchy.
shutil.move( uploaded_file_name, full_path )
# See if any admin users have chosen to receive email alerts when a repository is
# updated. If so, check every uploaded file to ensure content is appropriate.
check_contents = suc.check_file_contents( trans )
if check_contents and os.path.isfile( full_path ):
content_alert_str = self.__check_file_content( full_path )
else:
content_alert_str = ''
commands.add( repo.ui, repo, full_path )
# Convert from unicode to prevent "TypeError: array item must be char"
full_path = full_path.encode( 'ascii', 'replace' )
commands.commit( repo.ui, repo, full_path, user=trans.user.username, message=commit_message )
if full_path.endswith( 'tool_data_table_conf.xml.sample' ):
# Handle the special case where a tool_data_table_conf.xml.sample file is being uploaded by parsing the file and adding new entries
# to the in-memory trans.app.tool_data_tables dictionary.
error, error_message = suc.handle_sample_tool_data_table_conf_file( trans.app, full_path )
if error:
message = '%s<br/>%s' % ( message, error_message )
# See if the content of the change set was valid.
admin_only = len( repository.downloadable_revisions ) != 1
suc.handle_email_alerts( trans, repository, content_alert_str=content_alert_str, new_repo_alert=new_repo_alert, admin_only=admin_only )
if ok:
# Update the repository files for browsing.
suc.update_repository( repo )
# Get the new repository tip.
if tip == repository.tip( trans.app ):
message = 'No changes to repository. '
status = 'warning'
else:
if ( isgzip or isbz2 ) and uncompress_file:
uncompress_str = ' uncompressed and '
else:
uncompress_str = ' '
if uploaded_directory:
source_type = "repository"
source = url
else:
source_type = "file"
source = uploaded_file_filename
message = "The %s '%s' has been successfully%suploaded to the repository. " % ( source_type, source, uncompress_str )
if istar and ( undesirable_dirs_removed or undesirable_files_removed ):
items_removed = undesirable_dirs_removed + undesirable_files_removed
message += " %d undesirable items (.hg .svn .git directories, .DS_Store, hgrc files, etc) were removed from the archive. " % items_removed
if istar and remove_repo_files_not_in_tar and files_to_remove:
if upload_point is not None:
message += " %d files were removed from the repository relative to the selected upload point '%s'. " % ( len( files_to_remove ), upload_point )
else:
message += " %d files were removed from the repository root. " % len( files_to_remove )
kwd[ 'message' ] = message
suc.set_repository_metadata_due_to_new_tip( trans, repository, content_alert_str=content_alert_str, **kwd )
# Provide a warning message if a tool_dependencies.xml file is provided, but tool dependencies weren't loaded due to a requirement tag mismatch
# or some other problem.
if suc.get_config_from_disk( 'tool_dependencies.xml', repo_dir ):
if repository.metadata_revisions:
# A repository's metadata revisions are order descending by update_time, so the zeroth revision will be the tip just after an upload.
metadata_dict = repository.metadata_revisions[0].metadata
else:
metadata_dict = {}
if suc.has_orphan_tool_dependencies_in_tool_shed( metadata_dict ):
message += 'Name, version and type from a tool requirement tag does not match the information in the "tool_dependencies.xml file", '
message += 'so one or more of the defined tool dependencies are considered orphans within this repository.'
status = 'warning'
# Reset the tool_data_tables by loading the empty tool_data_table_conf.xml file.
suc.reset_tool_data_tables( trans.app )
trans.response.send_redirect( web.url_for( controller='repository',
action='browse_repository',
id=repository_id,
commit_message='Deleted selected files',
message=message,
status=status ) )
else:
status = 'error'
# Reset the tool_data_tables by loading the empty tool_data_table_conf.xml file.
suc.reset_tool_data_tables( trans.app )
def browse_repositories(self, trans, **kwd):
# We add params to the keyword dict in this method in order to rename the param
# with an "f-" prefix, simulating filtering by clicking a search link. We have
# to take this approach because the "-" character is illegal in HTTP requests.
if 'operation' in kwd:
operation = kwd['operation'].lower()
if operation == "view_or_manage_repository":
return trans.response.send_redirect(
web.url_for(controller='repository',
action='browse_repositories',
**kwd))
elif operation == "edit_repository":
return trans.response.send_redirect(
web.url_for(controller='repository',
action='edit_repository',
**kwd))
elif operation == "repositories_by_user":
# Eliminate the current filters if any exist.
for k, v in kwd.items():
if k.startswith('f-'):
del kwd[k]
if 'user_id' in kwd:
user = suc.get_user(trans, kwd['user_id'])
kwd['f-email'] = user.email
del kwd['user_id']
else:
# The received id is the repository id, so we need to get the id of the user
# that uploaded the repository.
repository_id = kwd.get('id', None)
repository = suc.get_repository_in_tool_shed(
trans, repository_id)
kwd['f-email'] = repository.user.email
elif operation == "repositories_by_category":
# Eliminate the current filters if any exist.
for k, v in kwd.items():
if k.startswith('f-'):
del kwd[k]
category_id = kwd.get('id', None)
category = suc.get_category(trans, category_id)
kwd['f-Category.name'] = category.name
elif operation == "receive email alerts":
if kwd['id']:
kwd['caller'] = 'browse_repositories'
return trans.response.send_redirect(
web.url_for(controller='repository',
action='set_email_alerts',
**kwd))
else:
del kwd['operation']
elif operation == 'delete':
return self.delete_repository(trans, **kwd)
elif operation == "undelete":
return self.undelete_repository(trans, **kwd)
# The changeset_revision_select_field in the RepositoryGrid performs a refresh_on_change
# which sends in request parameters like changeset_revison_1, changeset_revision_2, etc. One
# of the many select fields on the grid performed the refresh_on_change, so we loop through
# all of the received values to see which value is not the repository tip. If we find it, we
# know the refresh_on_change occurred, and we have the necessary repository id and change set
# revision to pass on.
for k, v in kwd.items():
changset_revision_str = 'changeset_revision_'
if k.startswith(changset_revision_str):
repository_id = trans.security.encode_id(
int(k.lstrip(changset_revision_str)))
repository = suc.get_repository_in_tool_shed(
trans, repository_id)
if repository.tip(trans.app) != v:
return trans.response.send_redirect(
web.url_for(controller='repository',
action='browse_repositories',
operation='view_or_manage_repository',
id=trans.security.encode_id(repository.id),
changeset_revision=v))
# Render the list view
return self.repository_grid(trans, **kwd)
