def undelete_repository( self, trans, **kwd ): params = util.Params( kwd ) message = util.restore_text( params.get( 'message', '' ) ) status = params.get( 'status', 'done' ) id = kwd.get( 'id', None ) if id: # Undeleting multiple items is currently not allowed (allow_multiple=False), so there will only be 1 id. ids = util.listify( id ) count = 0 undeleted_repositories = "" for repository_id in ids: repository = suc.get_repository_in_tool_shed( trans, repository_id ) if repository.deleted: repository.deleted = False trans.sa_session.add( repository ) trans.sa_session.flush() count += 1 undeleted_repositories += " %s" % repository.name if count: message = "Undeleted %d %s: %s" % ( count, inflector.cond_plural( count, "repository" ), undeleted_repositories ) else: message = "No selected repositories were marked deleted, so they could not be undeleted." else: message = "No repository ids received for undeleting." status = 'error' trans.response.send_redirect( web.url_for( controller='admin', action='browse_repositories', message=util.sanitize_text( message ), status='done' ) )
def manage_repository_reviews_of_revision(self, trans, **kwd): # The value of the received id is the encoded repository id. params = util.Params(kwd) message = util.restore_text(params.get('message', '')) status = params.get('status', 'done') repository_id = kwd.get('id', None) changeset_revision = kwd.get('changeset_revision', None) repository = suc.get_repository_in_tool_shed(trans, repository_id) repo_dir = repository.repo_path(trans.app) repo = hg.repository(suc.get_configured_ui(), repo_dir) installable = changeset_revision in [ metadata_revision.changeset_revision for metadata_revision in repository.metadata_revisions ] rev, changeset_revision_label = suc.get_rev_label_from_changeset_revision( repo, changeset_revision) reviews = suc.get_reviews_by_repository_id_changeset_revision( trans, repository_id, changeset_revision) return trans.fill_template( '/webapps/community/repository_review/reviews_of_changeset_revision.mako', repository=repository, changeset_revision=changeset_revision, changeset_revision_label=changeset_revision_label, reviews=reviews, installable=installable, message=message, status=status)
def undelete_repository(self, trans, **kwd): params = util.Params(kwd) message = util.restore_text(params.get('message', '')) status = params.get('status', 'done') id = kwd.get('id', None) if id: # Undeleting multiple items is currently not allowed (allow_multiple=False), so there will only be 1 id. ids = util.listify(id) count = 0 undeleted_repositories = "" for repository_id in ids: repository = suc.get_repository_in_tool_shed( trans, repository_id) if repository.deleted: repository.deleted = False trans.sa_session.add(repository) trans.sa_session.flush() count += 1 undeleted_repositories += " %s" % repository.name if count: message = "Undeleted %d %s: %s" % ( count, inflector.cond_plural( count, "repository"), undeleted_repositories) else: message = "No selected repositories were marked deleted, so they could not be undeleted." else: message = "No repository ids received for undeleting." status = 'error' trans.response.send_redirect( web.url_for(controller='admin', action='browse_repositories', message=util.sanitize_text(message), status='done'))
def manage_repository_reviews(self, trans, mine=False, **kwd): # The value of the received id is the encoded repository id. params = util.Params(kwd) message = util.restore_text(params.get('message', '')) status = params.get('status', 'done') repository_id = kwd.get('id', None) if repository_id: repository = suc.get_repository_in_tool_shed(trans, repository_id) repo_dir = repository.repo_path(trans.app) repo = hg.repository(suc.get_configured_ui(), repo_dir) metadata_revision_hashes = [ metadata_revision.changeset_revision for metadata_revision in repository.metadata_revisions ] reviewed_revision_hashes = [ review.changeset_revision for review in repository.reviews ] reviews_dict = odict() for changeset in suc.get_reversed_changelog_changesets(repo): ctx = repo.changectx(changeset) changeset_revision = str(ctx) if changeset_revision in metadata_revision_hashes or changeset_revision in reviewed_revision_hashes: rev, changeset_revision_label = suc.get_rev_label_from_changeset_revision( repo, changeset_revision) if changeset_revision in reviewed_revision_hashes: # Find the review for this changeset_revision repository_reviews = suc.get_reviews_by_repository_id_changeset_revision( trans, repository_id, changeset_revision) # Determine if the current user can add a review to this revision. can_add_review = trans.user not in [ repository_review.user for repository_review in repository_reviews ] repository_metadata = suc.get_repository_metadata_by_changeset_revision( trans, repository_id, changeset_revision) if repository_metadata: repository_metadata_reviews = util.listify( repository_metadata.reviews) else: repository_metadata_reviews = [] else: repository_reviews = [] repository_metadata_reviews = [] can_add_review = True installable = changeset_revision in metadata_revision_hashes revision_dict = dict( changeset_revision_label=changeset_revision_label, repository_reviews=repository_reviews, repository_metadata_reviews=repository_metadata_reviews, installable=installable, can_add_review=can_add_review) reviews_dict[changeset_revision] = revision_dict return trans.fill_template( '/webapps/community/repository_review/reviews_of_repository.mako', repository=repository, reviews_dict=reviews_dict, mine=mine, message=message, status=status)
def view_or_manage_repository( self, trans, **kwd ): repository = suc.get_repository_in_tool_shed( trans, kwd[ 'id' ] ) if trans.user_is_admin() or repository.user == trans.user: return trans.response.send_redirect( web.url_for( controller='repository', action='manage_repository', cntrller='repository_review', **kwd ) ) else: return trans.response.send_redirect( web.url_for( controller='repository', action='view_repository', cntrller='repository_review', **kwd ) )
def view_or_manage_repository(self, trans, **kwd): repository = suc.get_repository_in_tool_shed(trans, kwd['id']) if trans.user_is_admin() or repository.user == trans.user: return trans.response.send_redirect( web.url_for(controller='repository', action='manage_repository', cntrller='repository_review', **kwd)) else: return trans.response.send_redirect( web.url_for(controller='repository', action='view_repository', cntrller='repository_review', **kwd))
def select_previous_review( self, trans, **kwd ): # The value of the received id is the encoded repository id. params = util.Params( kwd ) message = util.restore_text( params.get( 'message', '' ) ) status = params.get( 'status', 'done' ) repository = suc.get_repository_in_tool_shed( trans, kwd[ 'id' ] ) changeset_revision = kwd.get( 'changeset_revision', None ) repo = hg.repository( suc.get_configured_ui(), repository.repo_path( trans.app ) ) previous_reviews_dict = suc.get_previous_repository_reviews( trans, repository, changeset_revision ) rev, changeset_revision_label = suc.get_rev_label_from_changeset_revision( repo, changeset_revision ) return trans.fill_template( '/webapps/community/repository_review/select_previous_review.mako', repository=repository, changeset_revision=changeset_revision, changeset_revision_label=changeset_revision_label, previous_reviews_dict=previous_reviews_dict, message=message, status=status )
def manage_repository_reviews( self, trans, mine=False, **kwd ): # The value of the received id is the encoded repository id. params = util.Params( kwd ) message = util.restore_text( params.get( 'message', '' ) ) status = params.get( 'status', 'done' ) repository_id = kwd.get( 'id', None ) if repository_id: repository = suc.get_repository_in_tool_shed( trans, repository_id ) repo_dir = repository.repo_path( trans.app ) repo = hg.repository( suc.get_configured_ui(), repo_dir ) metadata_revision_hashes = [ metadata_revision.changeset_revision for metadata_revision in repository.metadata_revisions ] reviewed_revision_hashes = [ review.changeset_revision for review in repository.reviews ] reviews_dict = odict() for changeset in suc.get_reversed_changelog_changesets( repo ): ctx = repo.changectx( changeset ) changeset_revision = str( ctx ) if changeset_revision in metadata_revision_hashes or changeset_revision in reviewed_revision_hashes: rev, changeset_revision_label = suc.get_rev_label_from_changeset_revision( repo, changeset_revision ) if changeset_revision in reviewed_revision_hashes: # Find the review for this changeset_revision repository_reviews = suc.get_reviews_by_repository_id_changeset_revision( trans, repository_id, changeset_revision ) # Determine if the current user can add a review to this revision. can_add_review = trans.user not in [ repository_review.user for repository_review in repository_reviews ] repository_metadata = suc.get_repository_metadata_by_changeset_revision( trans, repository_id, changeset_revision ) if repository_metadata: repository_metadata_reviews = util.listify( repository_metadata.reviews ) else: repository_metadata_reviews = [] else: repository_reviews = [] repository_metadata_reviews = [] can_add_review = True installable = changeset_revision in metadata_revision_hashes revision_dict = dict( changeset_revision_label=changeset_revision_label, repository_reviews=repository_reviews, repository_metadata_reviews=repository_metadata_reviews, installable=installable, can_add_review=can_add_review ) reviews_dict[ changeset_revision ] = revision_dict return trans.fill_template( '/webapps/community/repository_review/reviews_of_repository.mako', repository=repository, reviews_dict=reviews_dict, mine=mine, message=message, status=status )
def manage_repository_reviews_of_revision( self, trans, **kwd ): # The value of the received id is the encoded repository id. params = util.Params( kwd ) message = util.restore_text( params.get( 'message', '' ) ) status = params.get( 'status', 'done' ) repository_id = kwd.get( 'id', None ) changeset_revision = kwd.get( 'changeset_revision', None ) repository = suc.get_repository_in_tool_shed( trans, repository_id ) repo_dir = repository.repo_path( trans.app ) repo = hg.repository( suc.get_configured_ui(), repo_dir ) installable = changeset_revision in [ metadata_revision.changeset_revision for metadata_revision in repository.metadata_revisions ] rev, changeset_revision_label = suc.get_rev_label_from_changeset_revision( repo, changeset_revision ) reviews = suc.get_reviews_by_repository_id_changeset_revision( trans, repository_id, changeset_revision ) return trans.fill_template( '/webapps/community/repository_review/reviews_of_changeset_revision.mako', repository=repository, changeset_revision=changeset_revision, changeset_revision_label=changeset_revision_label, reviews=reviews, installable=installable, message=message, status=status )
def select_previous_review(self, trans, **kwd): # The value of the received id is the encoded repository id. params = util.Params(kwd) message = util.restore_text(params.get('message', '')) status = params.get('status', 'done') repository = suc.get_repository_in_tool_shed(trans, kwd['id']) changeset_revision = kwd.get('changeset_revision', None) repo = hg.repository(suc.get_configured_ui(), repository.repo_path(trans.app)) previous_reviews_dict = suc.get_previous_repository_reviews( trans, repository, changeset_revision) rev, changeset_revision_label = suc.get_rev_label_from_changeset_revision( repo, changeset_revision) return trans.fill_template( '/webapps/community/repository_review/select_previous_review.mako', repository=repository, changeset_revision=changeset_revision, changeset_revision_label=changeset_revision_label, previous_reviews_dict=previous_reviews_dict, message=message, status=status)
def create_review( self, trans, **kwd ): # The value of the received id is the encoded repository id. params = util.Params( kwd ) message = util.restore_text( params.get( 'message', '' ) ) status = params.get( 'status', 'done' ) repository_id = kwd.get( 'id', None ) changeset_revision = kwd.get( 'changeset_revision', None ) previous_review_id = kwd.get( 'previous_review_id', None ) create_without_copying = 'create_without_copying' in kwd if repository_id: if changeset_revision: # Make sure there is not already a review of the revision by the user. repository = suc.get_repository_in_tool_shed( trans, repository_id ) if suc.get_review_by_repository_id_changeset_revision_user_id( trans=trans, repository_id=repository_id, changeset_revision=changeset_revision, user_id=trans.security.encode_id( trans.user.id ) ): message = "You have already created a review for revision <b>%s</b> of repository <b>%s</b>." % ( changeset_revision, repository.name ) status = "error" else: # See if there are any reviews for previous changeset revisions that the user can copy. if not create_without_copying and not previous_review_id and suc.has_previous_repository_reviews( trans, repository, changeset_revision ): return trans.response.send_redirect( web.url_for( controller='repository_review', action='select_previous_review', **kwd ) ) # A review can be initially performed only on an installable revision of a repository, so make sure we have metadata associated # with the received changeset_revision. repository_metadata = suc.get_repository_metadata_by_changeset_revision( trans, repository_id, changeset_revision ) if repository_metadata: metadata = repository_metadata.metadata if metadata: review = trans.app.model.RepositoryReview( repository_id=repository_metadata.repository_id, changeset_revision=changeset_revision, user_id=trans.user.id, rating=None, deleted=False ) trans.sa_session.add( review ) trans.sa_session.flush() if previous_review_id: review_to_copy = suc.get_review( trans, previous_review_id ) self.copy_review( trans, review_to_copy, review ) review_id = trans.security.encode_id( review.id ) message = "Begin your review of revision <b>%s</b> of repository <b>%s</b>." \ % ( changeset_revision, repository.name ) status = 'done' trans.response.send_redirect( web.url_for( controller='repository_review', action='edit_review', id=review_id, message=message, status=status ) ) else: message = "A new review cannot be created for revision <b>%s</b> of repository <b>%s</b>. Select a valid revision and try again." \ % ( changeset_revision, repository.name ) kwd[ 'message' ] = message kwd[ 'status' ] = 'error' else: return trans.response.send_redirect( web.url_for( controller='repository_review', action='manage_repository_reviews', **kwd ) ) return trans.response.send_redirect( web.url_for( controller='repository_review', action='view_or_manage_repository', **kwd ) )
def upload(self, trans, **kwd): params = util.Params(kwd) message = util.restore_text(params.get('message', '')) status = params.get('status', 'done') commit_message = util.restore_text( params.get('commit_message', 'Uploaded')) category_ids = util.listify(params.get('category_id', '')) categories = suc.get_categories(trans) repository_id = params.get('repository_id', '') repository = suc.get_repository_in_tool_shed(trans, repository_id) repo_dir = repository.repo_path(trans.app) repo = hg.repository(suc.get_configured_ui(), repo_dir) uncompress_file = util.string_as_bool( params.get('uncompress_file', 'true')) remove_repo_files_not_in_tar = util.string_as_bool( params.get('remove_repo_files_not_in_tar', 'true')) uploaded_file = None upload_point = self.__get_upload_point(repository, **kwd) tip = repository.tip(trans.app) file_data = params.get('file_data', '') url = params.get('url', '') # Part of the upload process is sending email notification to those that have registered to # receive them. One scenario occurs when the first change set is produced for the repository. # See the suc.handle_email_alerts() method for the definition of the scenarios. new_repo_alert = repository.is_new(trans.app) uploaded_directory = None if params.get('upload_button', False): if file_data == '' and url == '': message = 'No files were entered on the upload form.' status = 'error' uploaded_file = None elif url and url.startswith('hg'): # Use mercurial clone to fetch repository, contents will then be copied over. uploaded_directory = tempfile.mkdtemp() repo_url = 'http%s' % url[len('hg'):] repo_url = repo_url.encode('ascii', 'replace') commands.clone(suc.get_configured_ui(), repo_url, uploaded_directory) elif url: valid_url = True try: stream = urllib.urlopen(url) except Exception, e: valid_url = False message = 'Error uploading file via http: %s' % str(e) status = 'error' uploaded_file = None if valid_url: fd, uploaded_file_name = tempfile.mkstemp() uploaded_file = open(uploaded_file_name, 'wb') while 1: chunk = stream.read(CHUNK_SIZE) if not chunk: break uploaded_file.write(chunk) uploaded_file.flush() uploaded_file_filename = url.split('/')[-1] isempty = os.path.getsize( os.path.abspath(uploaded_file_name)) == 0 elif file_data not in ('', None): uploaded_file = file_data.file uploaded_file_name = uploaded_file.name uploaded_file_filename = os.path.split(file_data.filename)[-1] isempty = os.path.getsize( os.path.abspath(uploaded_file_name)) == 0 if uploaded_file or uploaded_directory: ok = True isgzip = False isbz2 = False if uploaded_file: if uncompress_file: isgzip = checkers.is_gzip(uploaded_file_name) if not isgzip: isbz2 = checkers.is_bz2(uploaded_file_name) if isempty: tar = None istar = False else: # Determine what we have - a single file or an archive try: if (isgzip or isbz2) and uncompress_file: # Open for reading with transparent compression. tar = tarfile.open(uploaded_file_name, 'r:*') else: tar = tarfile.open(uploaded_file_name) istar = True except tarfile.ReadError, e: tar = None istar = False else: # Uploaded directory istar = False if istar: ok, message, files_to_remove, content_alert_str, undesirable_dirs_removed, undesirable_files_removed = \ self.upload_tar( trans, repository, tar, uploaded_file, upload_point, remove_repo_files_not_in_tar, commit_message, new_repo_alert ) elif uploaded_directory: ok,message, files_to_remove, content_alert_str, undesirable_dirs_removed, undesirable_files_removed = \ self.upload_directory( trans, repository, uploaded_directory, upload_point, remove_repo_files_not_in_tar, commit_message, new_repo_alert ) else: if (isgzip or isbz2) and uncompress_file: uploaded_file_filename = self.uncompress( repository, uploaded_file_name, uploaded_file_filename, isgzip, isbz2) if upload_point is not None: full_path = os.path.abspath( os.path.join(repo_dir, upload_point, uploaded_file_filename)) else: full_path = os.path.abspath( os.path.join(repo_dir, uploaded_file_filename)) # Move the uploaded file to the load_point within the repository hierarchy. shutil.move(uploaded_file_name, full_path) # See if any admin users have chosen to receive email alerts when a repository is # updated. If so, check every uploaded file to ensure content is appropriate. check_contents = suc.check_file_contents(trans) if check_contents and os.path.isfile(full_path): content_alert_str = self.__check_file_content( full_path) else: content_alert_str = '' commands.add(repo.ui, repo, full_path) # Convert from unicode to prevent "TypeError: array item must be char" full_path = full_path.encode('ascii', 'replace') commands.commit(repo.ui, repo, full_path, user=trans.user.username, message=commit_message) if full_path.endswith('tool_data_table_conf.xml.sample'): # Handle the special case where a tool_data_table_conf.xml.sample file is being uploaded by parsing the file and adding new entries # to the in-memory trans.app.tool_data_tables dictionary. error, error_message = suc.handle_sample_tool_data_table_conf_file( trans.app, full_path) if error: message = '%s<br/>%s' % (message, error_message) # See if the content of the change set was valid. admin_only = len(repository.downloadable_revisions) != 1 suc.handle_email_alerts( trans, repository, content_alert_str=content_alert_str, new_repo_alert=new_repo_alert, admin_only=admin_only) if ok: # Update the repository files for browsing. suc.update_repository(repo) # Get the new repository tip. if tip == repository.tip(trans.app): message = 'No changes to repository. ' status = 'warning' else: if (isgzip or isbz2) and uncompress_file: uncompress_str = ' uncompressed and ' else: uncompress_str = ' ' if uploaded_directory: source_type = "repository" source = url else: source_type = "file" source = uploaded_file_filename message = "The %s '%s' has been successfully%suploaded to the repository. " % ( source_type, source, uncompress_str) if istar and (undesirable_dirs_removed or undesirable_files_removed): items_removed = undesirable_dirs_removed + undesirable_files_removed message += " %d undesirable items (.hg .svn .git directories, .DS_Store, hgrc files, etc) were removed from the archive. " % items_removed if istar and remove_repo_files_not_in_tar and files_to_remove: if upload_point is not None: message += " %d files were removed from the repository relative to the selected upload point '%s'. " % ( len(files_to_remove), upload_point) else: message += " %d files were removed from the repository root. " % len( files_to_remove) kwd['message'] = message suc.set_repository_metadata_due_to_new_tip( trans, repository, content_alert_str=content_alert_str, **kwd) # Provide a warning message if a tool_dependencies.xml file is provided, but tool dependencies weren't loaded due to a requirement tag mismatch # or some other problem. if suc.get_config_from_disk('tool_dependencies.xml', repo_dir): if repository.metadata_revisions: # A repository's metadata revisions are order descending by update_time, so the zeroth revision will be the tip just after an upload. metadata_dict = repository.metadata_revisions[ 0].metadata else: metadata_dict = {} if suc.has_orphan_tool_dependencies_in_tool_shed( metadata_dict): message += 'Name, version and type from a tool requirement tag does not match the information in the "tool_dependencies.xml file", ' message += 'so one or more of the defined tool dependencies are considered orphans within this repository.' status = 'warning' # Reset the tool_data_tables by loading the empty tool_data_table_conf.xml file. suc.reset_tool_data_tables(trans.app) trans.response.send_redirect( web.url_for(controller='repository', action='browse_repository', id=repository_id, commit_message='Deleted selected files', message=message, status=status)) else: status = 'error' # Reset the tool_data_tables by loading the empty tool_data_table_conf.xml file. suc.reset_tool_data_tables(trans.app)
def browse_repositories( self, trans, **kwd ): # We add params to the keyword dict in this method in order to rename the param # with an "f-" prefix, simulating filtering by clicking a search link. We have # to take this approach because the "-" character is illegal in HTTP requests. if 'operation' in kwd: operation = kwd['operation'].lower() if operation == "view_or_manage_repository": return trans.response.send_redirect( web.url_for( controller='repository', action='browse_repositories', **kwd ) ) elif operation == "edit_repository": return trans.response.send_redirect( web.url_for( controller='repository', action='edit_repository', **kwd ) ) elif operation == "repositories_by_user": # Eliminate the current filters if any exist. for k, v in kwd.items(): if k.startswith( 'f-' ): del kwd[ k ] if 'user_id' in kwd: user = suc.get_user( trans, kwd[ 'user_id' ] ) kwd[ 'f-email' ] = user.email del kwd[ 'user_id' ] else: # The received id is the repository id, so we need to get the id of the user # that uploaded the repository. repository_id = kwd.get( 'id', None ) repository = suc.get_repository_in_tool_shed( trans, repository_id ) kwd[ 'f-email' ] = repository.user.email elif operation == "repositories_by_category": # Eliminate the current filters if any exist. for k, v in kwd.items(): if k.startswith( 'f-' ): del kwd[ k ] category_id = kwd.get( 'id', None ) category = suc.get_category( trans, category_id ) kwd[ 'f-Category.name' ] = category.name elif operation == "receive email alerts": if kwd[ 'id' ]: kwd[ 'caller' ] = 'browse_repositories' return trans.response.send_redirect( web.url_for( controller='repository', action='set_email_alerts', **kwd ) ) else: del kwd[ 'operation' ] elif operation == 'delete': return self.delete_repository( trans, **kwd ) elif operation == "undelete": return self.undelete_repository( trans, **kwd ) # The changeset_revision_select_field in the RepositoryGrid performs a refresh_on_change # which sends in request parameters like changeset_revison_1, changeset_revision_2, etc. One # of the many select fields on the grid performed the refresh_on_change, so we loop through # all of the received values to see which value is not the repository tip. If we find it, we # know the refresh_on_change occurred, and we have the necessary repository id and change set # revision to pass on. for k, v in kwd.items(): changset_revision_str = 'changeset_revision_' if k.startswith( changset_revision_str ): repository_id = trans.security.encode_id( int( k.lstrip( changset_revision_str ) ) ) repository = suc.get_repository_in_tool_shed( trans, repository_id ) if repository.tip( trans.app ) != v: return trans.response.send_redirect( web.url_for( controller='repository', action='browse_repositories', operation='view_or_manage_repository', id=trans.security.encode_id( repository.id ), changeset_revision=v ) ) # Render the list view return self.repository_grid( trans, **kwd )
def create_review(self, trans, **kwd): # The value of the received id is the encoded repository id. params = util.Params(kwd) message = util.restore_text(params.get('message', '')) status = params.get('status', 'done') repository_id = kwd.get('id', None) changeset_revision = kwd.get('changeset_revision', None) previous_review_id = kwd.get('previous_review_id', None) create_without_copying = 'create_without_copying' in kwd if repository_id: if changeset_revision: # Make sure there is not already a review of the revision by the user. repository = suc.get_repository_in_tool_shed( trans, repository_id) if suc.get_review_by_repository_id_changeset_revision_user_id( trans=trans, repository_id=repository_id, changeset_revision=changeset_revision, user_id=trans.security.encode_id(trans.user.id)): message = "You have already created a review for revision <b>%s</b> of repository <b>%s</b>." % ( changeset_revision, repository.name) status = "error" else: # See if there are any reviews for previous changeset revisions that the user can copy. if not create_without_copying and not previous_review_id and suc.has_previous_repository_reviews( trans, repository, changeset_revision): return trans.response.send_redirect( web.url_for(controller='repository_review', action='select_previous_review', **kwd)) # A review can be initially performed only on an installable revision of a repository, so make sure we have metadata associated # with the received changeset_revision. repository_metadata = suc.get_repository_metadata_by_changeset_revision( trans, repository_id, changeset_revision) if repository_metadata: metadata = repository_metadata.metadata if metadata: review = trans.app.model.RepositoryReview( repository_id=repository_metadata. repository_id, changeset_revision=changeset_revision, user_id=trans.user.id, rating=None, deleted=False) trans.sa_session.add(review) trans.sa_session.flush() if previous_review_id: review_to_copy = suc.get_review( trans, previous_review_id) self.copy_review(trans, review_to_copy, review) review_id = trans.security.encode_id(review.id) message = "Begin your review of revision <b>%s</b> of repository <b>%s</b>." \ % ( changeset_revision, repository.name ) status = 'done' trans.response.send_redirect( web.url_for(controller='repository_review', action='edit_review', id=review_id, message=message, status=status)) else: message = "A new review cannot be created for revision <b>%s</b> of repository <b>%s</b>. Select a valid revision and try again." \ % ( changeset_revision, repository.name ) kwd['message'] = message kwd['status'] = 'error' else: return trans.response.send_redirect( web.url_for(controller='repository_review', action='manage_repository_reviews', **kwd)) return trans.response.send_redirect( web.url_for(controller='repository_review', action='view_or_manage_repository', **kwd))
def upload( self, trans, **kwd ): params = util.Params( kwd ) message = util.restore_text( params.get( 'message', '' ) ) status = params.get( 'status', 'done' ) commit_message = util.restore_text( params.get( 'commit_message', 'Uploaded' ) ) category_ids = util.listify( params.get( 'category_id', '' ) ) categories = suc.get_categories( trans ) repository_id = params.get( 'repository_id', '' ) repository = suc.get_repository_in_tool_shed( trans, repository_id ) repo_dir = repository.repo_path( trans.app ) repo = hg.repository( suc.get_configured_ui(), repo_dir ) uncompress_file = util.string_as_bool( params.get( 'uncompress_file', 'true' ) ) remove_repo_files_not_in_tar = util.string_as_bool( params.get( 'remove_repo_files_not_in_tar', 'true' ) ) uploaded_file = None upload_point = self.__get_upload_point( repository, **kwd ) tip = repository.tip( trans.app ) file_data = params.get( 'file_data', '' ) url = params.get( 'url', '' ) # Part of the upload process is sending email notification to those that have registered to # receive them. One scenario occurs when the first change set is produced for the repository. # See the suc.handle_email_alerts() method for the definition of the scenarios. new_repo_alert = repository.is_new( trans.app ) uploaded_directory = None if params.get( 'upload_button', False ): if file_data == '' and url == '': message = 'No files were entered on the upload form.' status = 'error' uploaded_file = None elif url and url.startswith( 'hg' ): # Use mercurial clone to fetch repository, contents will then be copied over. uploaded_directory = tempfile.mkdtemp() repo_url = 'http%s' % url[ len( 'hg' ): ] repo_url = repo_url.encode( 'ascii', 'replace' ) commands.clone( suc.get_configured_ui(), repo_url, uploaded_directory ) elif url: valid_url = True try: stream = urllib.urlopen( url ) except Exception, e: valid_url = False message = 'Error uploading file via http: %s' % str( e ) status = 'error' uploaded_file = None if valid_url: fd, uploaded_file_name = tempfile.mkstemp() uploaded_file = open( uploaded_file_name, 'wb' ) while 1: chunk = stream.read( CHUNK_SIZE ) if not chunk: break uploaded_file.write( chunk ) uploaded_file.flush() uploaded_file_filename = url.split( '/' )[ -1 ] isempty = os.path.getsize( os.path.abspath( uploaded_file_name ) ) == 0 elif file_data not in ( '', None ): uploaded_file = file_data.file uploaded_file_name = uploaded_file.name uploaded_file_filename = os.path.split( file_data.filename )[ -1 ] isempty = os.path.getsize( os.path.abspath( uploaded_file_name ) ) == 0 if uploaded_file or uploaded_directory: ok = True isgzip = False isbz2 = False if uploaded_file: if uncompress_file: isgzip = checkers.is_gzip( uploaded_file_name ) if not isgzip: isbz2 = checkers.is_bz2( uploaded_file_name ) if isempty: tar = None istar = False else: # Determine what we have - a single file or an archive try: if ( isgzip or isbz2 ) and uncompress_file: # Open for reading with transparent compression. tar = tarfile.open( uploaded_file_name, 'r:*' ) else: tar = tarfile.open( uploaded_file_name ) istar = True except tarfile.ReadError, e: tar = None istar = False else: # Uploaded directory istar = False if istar: ok, message, files_to_remove, content_alert_str, undesirable_dirs_removed, undesirable_files_removed = \ self.upload_tar( trans, repository, tar, uploaded_file, upload_point, remove_repo_files_not_in_tar, commit_message, new_repo_alert ) elif uploaded_directory: ok,message, files_to_remove, content_alert_str, undesirable_dirs_removed, undesirable_files_removed = \ self.upload_directory( trans, repository, uploaded_directory, upload_point, remove_repo_files_not_in_tar, commit_message, new_repo_alert ) else: if ( isgzip or isbz2 ) and uncompress_file: uploaded_file_filename = self.uncompress( repository, uploaded_file_name, uploaded_file_filename, isgzip, isbz2 ) if upload_point is not None: full_path = os.path.abspath( os.path.join( repo_dir, upload_point, uploaded_file_filename ) ) else: full_path = os.path.abspath( os.path.join( repo_dir, uploaded_file_filename ) ) # Move the uploaded file to the load_point within the repository hierarchy. shutil.move( uploaded_file_name, full_path ) # See if any admin users have chosen to receive email alerts when a repository is # updated. If so, check every uploaded file to ensure content is appropriate. check_contents = suc.check_file_contents( trans ) if check_contents and os.path.isfile( full_path ): content_alert_str = self.__check_file_content( full_path ) else: content_alert_str = '' commands.add( repo.ui, repo, full_path ) # Convert from unicode to prevent "TypeError: array item must be char" full_path = full_path.encode( 'ascii', 'replace' ) commands.commit( repo.ui, repo, full_path, user=trans.user.username, message=commit_message ) if full_path.endswith( 'tool_data_table_conf.xml.sample' ): # Handle the special case where a tool_data_table_conf.xml.sample file is being uploaded by parsing the file and adding new entries # to the in-memory trans.app.tool_data_tables dictionary. error, error_message = suc.handle_sample_tool_data_table_conf_file( trans.app, full_path ) if error: message = '%s<br/>%s' % ( message, error_message ) # See if the content of the change set was valid. admin_only = len( repository.downloadable_revisions ) != 1 suc.handle_email_alerts( trans, repository, content_alert_str=content_alert_str, new_repo_alert=new_repo_alert, admin_only=admin_only ) if ok: # Update the repository files for browsing. suc.update_repository( repo ) # Get the new repository tip. if tip == repository.tip( trans.app ): message = 'No changes to repository. ' status = 'warning' else: if ( isgzip or isbz2 ) and uncompress_file: uncompress_str = ' uncompressed and ' else: uncompress_str = ' ' if uploaded_directory: source_type = "repository" source = url else: source_type = "file" source = uploaded_file_filename message = "The %s '%s' has been successfully%suploaded to the repository. " % ( source_type, source, uncompress_str ) if istar and ( undesirable_dirs_removed or undesirable_files_removed ): items_removed = undesirable_dirs_removed + undesirable_files_removed message += " %d undesirable items (.hg .svn .git directories, .DS_Store, hgrc files, etc) were removed from the archive. " % items_removed if istar and remove_repo_files_not_in_tar and files_to_remove: if upload_point is not None: message += " %d files were removed from the repository relative to the selected upload point '%s'. " % ( len( files_to_remove ), upload_point ) else: message += " %d files were removed from the repository root. " % len( files_to_remove ) kwd[ 'message' ] = message suc.set_repository_metadata_due_to_new_tip( trans, repository, content_alert_str=content_alert_str, **kwd ) # Provide a warning message if a tool_dependencies.xml file is provided, but tool dependencies weren't loaded due to a requirement tag mismatch # or some other problem. if suc.get_config_from_disk( 'tool_dependencies.xml', repo_dir ): if repository.metadata_revisions: # A repository's metadata revisions are order descending by update_time, so the zeroth revision will be the tip just after an upload. metadata_dict = repository.metadata_revisions[0].metadata else: metadata_dict = {} if suc.has_orphan_tool_dependencies_in_tool_shed( metadata_dict ): message += 'Name, version and type from a tool requirement tag does not match the information in the "tool_dependencies.xml file", ' message += 'so one or more of the defined tool dependencies are considered orphans within this repository.' status = 'warning' # Reset the tool_data_tables by loading the empty tool_data_table_conf.xml file. suc.reset_tool_data_tables( trans.app ) trans.response.send_redirect( web.url_for( controller='repository', action='browse_repository', id=repository_id, commit_message='Deleted selected files', message=message, status=status ) ) else: status = 'error' # Reset the tool_data_tables by loading the empty tool_data_table_conf.xml file. suc.reset_tool_data_tables( trans.app )
def browse_repositories(self, trans, **kwd): # We add params to the keyword dict in this method in order to rename the param # with an "f-" prefix, simulating filtering by clicking a search link. We have # to take this approach because the "-" character is illegal in HTTP requests. if 'operation' in kwd: operation = kwd['operation'].lower() if operation == "view_or_manage_repository": return trans.response.send_redirect( web.url_for(controller='repository', action='browse_repositories', **kwd)) elif operation == "edit_repository": return trans.response.send_redirect( web.url_for(controller='repository', action='edit_repository', **kwd)) elif operation == "repositories_by_user": # Eliminate the current filters if any exist. for k, v in kwd.items(): if k.startswith('f-'): del kwd[k] if 'user_id' in kwd: user = suc.get_user(trans, kwd['user_id']) kwd['f-email'] = user.email del kwd['user_id'] else: # The received id is the repository id, so we need to get the id of the user # that uploaded the repository. repository_id = kwd.get('id', None) repository = suc.get_repository_in_tool_shed( trans, repository_id) kwd['f-email'] = repository.user.email elif operation == "repositories_by_category": # Eliminate the current filters if any exist. for k, v in kwd.items(): if k.startswith('f-'): del kwd[k] category_id = kwd.get('id', None) category = suc.get_category(trans, category_id) kwd['f-Category.name'] = category.name elif operation == "receive email alerts": if kwd['id']: kwd['caller'] = 'browse_repositories' return trans.response.send_redirect( web.url_for(controller='repository', action='set_email_alerts', **kwd)) else: del kwd['operation'] elif operation == 'delete': return self.delete_repository(trans, **kwd) elif operation == "undelete": return self.undelete_repository(trans, **kwd) # The changeset_revision_select_field in the RepositoryGrid performs a refresh_on_change # which sends in request parameters like changeset_revison_1, changeset_revision_2, etc. One # of the many select fields on the grid performed the refresh_on_change, so we loop through # all of the received values to see which value is not the repository tip. If we find it, we # know the refresh_on_change occurred, and we have the necessary repository id and change set # revision to pass on. for k, v in kwd.items(): changset_revision_str = 'changeset_revision_' if k.startswith(changset_revision_str): repository_id = trans.security.encode_id( int(k.lstrip(changset_revision_str))) repository = suc.get_repository_in_tool_shed( trans, repository_id) if repository.tip(trans.app) != v: return trans.response.send_redirect( web.url_for(controller='repository', action='browse_repositories', operation='view_or_manage_repository', id=trans.security.encode_id(repository.id), changeset_revision=v)) # Render the list view return self.repository_grid(trans, **kwd)