def load_files(inspire_ids, send_tweet=False, synchronous=False):
"""
:param synchronous: if should be run immediately
:param send_tweet: whether or not to tweet this entry.
:param inspire_ids: array of inspire ids to load (in the format insXXX).
:return: None
"""
migrator = Migrator()
for index, inspire_id in enumerate(inspire_ids):
_cleaned_id = inspire_id.replace("ins", "")
if not record_exists(inspire_id=_cleaned_id):
print('The record with id {0} does not exist in the database, so we\'re loading it.'.format(inspire_id))
try:
log.info('Loading {0}'.format(inspire_id))
if synchronous:
migrator.load_file(inspire_id, send_tweet)
else:
migrator.load_file.delay(inspire_id, send_tweet)
except socket.error as se:
print('socket error...')
log.error(se.message)
except Exception as e:
print('Failed to load {0}. {1} '.format(inspire_id, e))
log.error('Failed to load {0}. {1} '.format(inspire_id, e))
else:
print('The record with inspire id {0} already exists. Updating instead.'.format(inspire_id))
log.info('Updating {}'.format(inspire_id))
if synchronous:
update_submissions([inspire_id], send_tweet)
else:
update_submissions.delay([inspire_id], send_tweet)
def get_missing_records():
inspire_ids = get_all_ids_in_current_system(prepend_id_with="")
missing_ids = []
for inspire_id in inspire_ids:
if not record_exists(inspire_id=inspire_id):
missing_ids.append(inspire_id)
print("Missing {} records.".format(len(missing_ids)))
print(missing_ids)
return missing_ids
def test_create_submission(app):
"""
Test the whole submission pipeline in loading a file, ensuring the HEPSubmission object is created,
all the files have been added, and the record has been indexed.
:return:
"""
with app.app_context():
# test submission part works
record = {'inspire_id': '19999999',
'title': 'HEPData Testing 1',
'reviewer': {'name': 'Testy McTester', 'email': '*****@*****.**'},
'uploader': {'name': 'Testy McTester', 'email': '*****@*****.**'},
'message': 'This is ready',
'user_id': 1}
hepdata_submission = process_submission_payload(**record)
assert (hepdata_submission.version == 1)
assert (hepdata_submission.overall_status == 'todo')
# test upload works
base_dir = os.path.dirname(os.path.realpath(__file__))
directory = os.path.join(base_dir, 'test_data/test_submission')
process_submission_directory(directory, os.path.join(directory, 'submission.yaml'),
hepdata_submission.publication_recid)
data_submissions = DataSubmission.query.filter_by(
publication_recid=hepdata_submission.publication_recid).count()
assert (data_submissions == 8)
assert (len(hepdata_submission.resources) == 4)
assert (len(hepdata_submission.participants) == 4)
do_finalise(hepdata_submission.publication_recid, force_finalise=True)
assert (record_exists(inspire_id=record['inspire_id']))
# Test record is in index...
index_records = get_records_matching_field('inspire_id', record['inspire_id'], doc_type='publication')
print(index_records)
assert (len(index_records['hits']['hits']) == 1)
publication_record = get_record_contents(hepdata_submission.publication_recid)
print(publication_record)
assert (publication_record is not None)
ctx = format_submission(hepdata_submission.publication_recid, publication_record, hepdata_submission.version, 1,
hepdata_submission)
assert(ctx is not None)
assert(ctx['version'] == 1)
assert (ctx['recid'] == hepdata_submission.publication_recid)
def get_missing_records():
"""
Finds all records that are missing in the new system (compared to the legacy environment)
and returns the IDs as a list
:return: an array of missing IDd
"""
inspire_ids = get_all_ids_in_current_system(prepend_id_with="")
missing_ids = []
for inspire_id in inspire_ids:
if not record_exists(inspire_id=inspire_id):
missing_ids.append(inspire_id)
print("Missing {} records.".format(len(missing_ids)))
print(missing_ids)
return missing_ids
def load_files(inspire_ids,
send_tweet=False,
synchronous=False,
convert=False,
base_url='http://hepdata.cedar.ac.uk/view/{0}/yaml'):
"""
:param base_url: override default base URL
:param convert:
:param synchronous: if should be run immediately
:param send_tweet: whether or not to tweet this entry.
:param inspire_ids: array of inspire ids to load (in the format insXXX).
:return: None
"""
migrator = Migrator()
for index, inspire_id in enumerate(inspire_ids):
_cleaned_id = inspire_id.replace("ins", "")
if not record_exists(inspire_id=_cleaned_id):
print(
"The record with id {0} does not exist in the database, so we're loading it."
.format(inspire_id))
try:
log.info("Loading {0}".format(inspire_id))
if synchronous:
migrator.load_file(inspire_id,
send_tweet,
convert=convert,
base_url=base_url)
else:
migrator.load_file.delay(inspire_id,
send_tweet,
convert=convert,
base_url=base_url)
except socket.error as se:
print("socket error...")
log.error(se.message)
except Exception as e:
print("Failed to load {0}. {1} ".format(inspire_id, e))
log.error("Failed to load {0}. {1} ".format(inspire_id, e))
else:
print(
"The record with inspire id {0} already exists. Updating instead."
.format(inspire_id))
log.info("Updating {}".format(inspire_id))
if synchronous:
update_submissions([inspire_id])
else:
update_submissions.delay([inspire_id])
def get_record_from_inspire():
if 'id' not in request.args:
return jsonify({'status': 'no inspire id provided'})
inspire_id = request.args['id']
content, status = get_inspire_record_information(inspire_id)
# check that id is not present already.
exists = record_exists(inspire_id=inspire_id)
if exists:
status = 'exists'
return jsonify({'source': 'inspire',
'id': inspire_id,
'query': content,
'status': status})
def get_record_from_inspire():
if 'id' not in request.args:
return jsonify({'status': 'no inspire id provided'})
inspire_id = request.args['id']
# check that id is not present already.
exists = record_exists(inspire_id=inspire_id)
if exists:
return jsonify({'status': 'exists', 'id': inspire_id})
content, status = get_inspire_record_information(inspire_id)
return jsonify({'source': 'inspire',
'id': inspire_id,
'query': content,
'status': status})
def test_create_submission(app, admin_idx):
"""
Test the whole submission pipeline in loading a file, ensuring the HEPSubmission object is created,
all the files have been added, and the record has been indexed.
:return:
"""
with app.app_context():
admin_idx.recreate_index()
# test submission part works
record = {
'inspire_id': '19999999',
'title': 'HEPData Testing 1',
'reviewer': {
'name': 'Testy McTester',
'email': '*****@*****.**'
},
'uploader': {
'name': 'Testy McTester',
'email': '*****@*****.**'
},
'message': 'This is ready',
'user_id': 1
}
hepdata_submission = process_submission_payload(**record)
assert (hepdata_submission.version == 1)
assert (hepdata_submission.overall_status == 'todo')
# test upload works
base_dir = os.path.dirname(os.path.realpath(__file__))
test_directory = os.path.join(base_dir, 'test_data/test_submission')
time_stamp = str(int(round(time.time())))
directory = get_data_path_for_record(
hepdata_submission.publication_recid, time_stamp)
shutil.copytree(test_directory, directory)
assert (os.path.exists(directory))
process_submission_directory(
directory, os.path.join(directory, 'submission.yaml'),
hepdata_submission.publication_recid)
admin_idx_results = admin_idx.search(
term=hepdata_submission.publication_recid, fields=['recid'])
assert (admin_idx_results is not None)
data_submissions = DataSubmission.query.filter_by(
publication_recid=hepdata_submission.publication_recid).count()
assert (data_submissions == 8)
assert (len(hepdata_submission.resources) == 4)
assert (len(hepdata_submission.participants) == 4)
do_finalise(hepdata_submission.publication_recid,
force_finalise=True,
convert=False)
assert (record_exists(inspire_id=record['inspire_id']))
# Test record is in index...
index_records = get_records_matching_field('inspire_id',
record['inspire_id'],
doc_type='publication')
assert (len(index_records['hits']['hits']) == 1)
publication_record = get_record_contents(
hepdata_submission.publication_recid)
assert (publication_record is not None)
ctx = format_submission(hepdata_submission.publication_recid,
publication_record, hepdata_submission.version,
1, hepdata_submission)
assert (ctx is not None)
assert (ctx['version'] == 1)
assert (ctx['recid'] == hepdata_submission.publication_recid)
# remove the submission and test that all is remove
unload_submission(hepdata_submission.publication_recid)
assert (not record_exists(inspire_id=record['inspire_id']))
data_submissions = DataSubmission.query.filter_by(
publication_recid=hepdata_submission.publication_recid).count()
assert (data_submissions == 0)
sleep(2)
admin_idx_results = admin_idx.search(
term=hepdata_submission.publication_recid, fields=['recid'])
assert (len(admin_idx_results) == 0)
# Check file dir has been deleted
assert (not os.path.exists(directory))
