def test_neg_strand(self):
segmentation = {
'gene_id_002': {
'tr_id_0003': [
mock.MagicMock(stop=100),
]
},
}
self.assertTrue(
xlsites._intersects_with_annotaton(100, segmentation, 2, '-'))
self.assertFalse(
xlsites._intersects_with_annotaton(101, segmentation, 2, '-'))
def test_pos_strand(self):
segmentation = {
'gene_id_001': {
'tr_id_0001': [
mock.MagicMock(start=100),
],
'gene_segment': [],
}
}
self.assertTrue(
xlsites._intersects_with_annotaton(100, segmentation, 1, '+'))
self.assertFalse(
xlsites._intersects_with_annotaton(101, segmentation, 1, '+'))
def test_neg_strand(self):
self.assertTrue(
xlsites._intersects_with_annotaton(100, self.annotation, 2, '-'))
self.assertFalse(
xlsites._intersects_with_annotaton(101, self.annotation, 2, '-'))