def test_bad_readmask_in_filter_fasta_file_limit_n():
ht = khmer.new_hashtable(4, 4**4)
khmer.reset_reporting_callback()
mmt = ht.fasta_file_to_minmax(reads_filename, N_READS)
try:
ht.filter_fasta_file_limit_n(mmt, 2, 2, "hi")
assert 0
except TypeError:
pass
except:
raise
def test_raise_in_filter_fasta_file_max():
ht = khmer.new_hashtable(4, 4**4)
khmer.reset_reporting_callback()
mmt = ht.fasta_file_to_minmax(reads_filename, N_READS)
try:
ht.filter_fasta_file_any(mmt, 2, None, callback_raise)
assert 0
except GoodException:
pass
except:
raise
def test_bad_readmask_in_filter_fasta_file_max():
ht = khmer.new_hashtable(4, 4**4)
khmer.reset_reporting_callback()
mmt = ht.fasta_file_to_minmax(reads_filename, N_READS)
try:
ht.filter_fasta_file_any(mmt, 2, "hi")
assert 0
except TypeError:
pass # expected
except:
raise
def test_raise_in_filter_fasta_file_max():
return ## @CTB
ht = khmer.new_hashtable(4, 4**4)
khmer.reset_reporting_callback()
mmt = ht.fasta_file_to_minmax(reads_filename, N_READS)
try:
ht.filter_fasta_file_any(mmt, 2, None, callback_raise)
assert 0
except GoodException:
pass
except:
raise
def teardown():
khmer.reset_reporting_callback()
def teardown():
khmer.reset_reporting_callback()
