def one_explo(param, param_to_explore):
PARAMFILE = "params.xml"
MEASUREFILE = "measures.xml"
result_path = "/media/thor/data/ktsimu/small_explo_ld_slope_ld0"
result_path = "/home/hadim/local/data/ktsimu/explo_ld_slope_ld0"
number_simu = 500
name = "explo_%s_%s" % (param['name'], str(param['value']))
ncore = 4
paramtree = ParamTree(PARAMFILE)
paramtree.change_dic(param['name'], param['value'])
explorator = Explorator(result_path,
number_simu,
name=name,
ncore=ncore,
paramtree=paramtree,
measurefile=MEASUREFILE,
parameter_to_explore=parameter_to_explore,
pool_eval=True,
name_without_date=True
)
explorator.run()
p = ProcessExploration(results_path=explorator.results_path)
p.evaluate(run_all=True, debug=True)
del explorator
del p
gc.collect()
import sys
sys.path.append('..')
from kt_simul.io.xml_handler import ParamTree
from kt_simul.core.simul_spindle import Metaphase
from kt_simul.io.simuio import SimuIO
from kt_simul.core import parameters
if __name__ == '__main__':
PARAMFILE = parameters.PARAMFILE
MEASUREFILE = parameters.MEASUREFILE
# Change some parameters
paramtree = ParamTree(PARAMFILE)
paramtree.change_dic('dt', 10)
paramtree.change_dic('span', 2000)
paramtree.change_dic('t_A', 1750)
measuretree = ParamTree(MEASUREFILE, adimentionalized=False)
# Arguments parser
parser = argparse.ArgumentParser(description='KtSimu Launcher')
parser.add_argument('--new', '-n', action='store_true', default=False,
help="Run a new simulation")
parser.add_argument('--results', '-r', type=str, default="simu.h5",
help="Specified results hdf5 file for new or already runned simulation")
args = parser.parse_args()
results_file = args.results
