def post(self):
user = self.current_user
plate_config_id = self.get_argument('plate_configuration')
plate_ext_id = self.get_argument('plate_name')
spp = SamplePlatingProcess.create(
user, PlateConfiguration(plate_config_id), plate_ext_id)
self.write({'plate_id': spp.plate.id, 'process_id': spp.id})
def test_get_previously_plated_wells(self):
tester = Plate(21)
three_plates_list = [Plate(27), Plate(30), Plate(33)]
exp = {Well(3073): three_plates_list, Well(3079): three_plates_list,
Well(3085): three_plates_list, Well(3091): three_plates_list,
Well(3097): three_plates_list, Well(3103): three_plates_list,
Well(3121): three_plates_list, Well(3127): three_plates_list,
Well(3133): three_plates_list, Well(3139): three_plates_list,
Well(3145): three_plates_list, Well(3151): three_plates_list,
Well(3169): three_plates_list, Well(3175): three_plates_list,
Well(3181): three_plates_list, Well(3187): three_plates_list,
Well(3193): three_plates_list, Well(3199): three_plates_list,
Well(3217): three_plates_list, Well(3223): three_plates_list,
Well(3229): three_plates_list, Well(3235): three_plates_list,
Well(3241): three_plates_list, Well(3247): three_plates_list,
Well(3265): three_plates_list, Well(3271): three_plates_list,
Well(3277): three_plates_list, Well(3283): three_plates_list,
Well(3289): three_plates_list, Well(3295): three_plates_list,
Well(3313): three_plates_list, Well(3319): three_plates_list,
Well(3325): three_plates_list, Well(3331): three_plates_list,
Well(3337): three_plates_list, Well(3343): three_plates_list,
Well(3361): three_plates_list, Well(3367): three_plates_list,
Well(3373): three_plates_list, Well(3379): three_plates_list,
Well(3385): three_plates_list, Well(3391): three_plates_list,
Well(3409): three_plates_list, Well(3415): three_plates_list,
Well(3421): three_plates_list, Well(3427): three_plates_list,
Well(3433): three_plates_list, Well(3439): three_plates_list,
Well(3457): three_plates_list, Well(3463): three_plates_list,
Well(3469): three_plates_list, Well(3475): three_plates_list,
Well(3481): three_plates_list, Well(3487): three_plates_list,
Well(3505): three_plates_list, Well(3511): three_plates_list,
Well(3517): three_plates_list, Well(3523): three_plates_list,
Well(3529): three_plates_list, Well(3535): three_plates_list,
Well(3553): three_plates_list, Well(3559): three_plates_list,
Well(3565): three_plates_list, Well(3571): three_plates_list,
Well(3577): three_plates_list, Well(3583): three_plates_list,
Well(3601): three_plates_list, Well(3607): three_plates_list,
Well(3613): three_plates_list, Well(3619): three_plates_list,
Well(3625): three_plates_list}
obs = tester.get_previously_plated_wells()
self.assertEqual(obs, exp)
# Create another plate and put a sample on it that isn't anywhere else
spp = SamplePlatingProcess.create(
User('*****@*****.**'), PlateConfiguration(1), 'New Plate For Prev')
spp.update_well(1, 1, '1.SKM1.640184')
obs = spp.plate.get_previously_plated_wells()
self.assertEqual(obs, {})
def test_get_previously_plated_wells(self):
tester = Plate(21)
self.assertEqual(tester.get_previously_plated_wells(), {})
# Create another plate and plate some samples in it
spp = SamplePlatingProcess.create(
User('*****@*****.**'), PlateConfiguration(1), 'New Plate For Prev')
spp.update_well(1, 1, '1.SKD1.640179')
exp = {}
plate = spp.plate
exp[Well(3208)] = [plate]
exp[Well(3388)] = [plate]
exp[Well(3568)] = [plate]
exp[Well(3748)] = [plate]
exp[Well(3928)] = [plate]
exp[Well(4108)] = [plate]
obs = tester.get_previously_plated_wells()
self.assertEqual(obs, exp)
def create_sample_plate_process(user, samples):
plate_config = PlateConfiguration(1)
num_rows = plate_config.num_rows
num_cols = plate_config.num_columns
sp_process = SamplePlatingProcess.create(user, plate_config,
'Test plate %s' % datetime.now())
# Plate the samples
for idx, sample in enumerate(samples):
i = int(idx / num_cols) + 1
j = (idx % num_cols) + 1
# Make sure that the user didn't pass more samples than wells
if i > num_rows:
break
sp_process.update_well(i, j, sample)
sample_plate = sp_process.plate
return sp_process, sample_plate