def main():
print("Welcome:")
p = OWLParser()
mgr = p.parse("examples/mod.rdf")
print(mgr)
for i in mgr.all_individual():
print("IND: {:s} '{:s}'".format(str(i), i.label("")))
for f in i.facts_out():
print(" FACT: {:s}".format(str(f)))
def main():
print("Welcome:")
p = OWLParser()
mgr = p.parse("examples/mod.rdf")
print(mgr)
for i in mgr.all_individual():
print("IND: {:s} '{:s}'".format(str(i), i.label("")))
for f in i.facts_out():
print(" FACT: {:s}".format(str(f)))
def main():
print("Welcome:")
p = OWLParser()
mgr = p.parse("examples/ceph.owl")
mgr.load_prefix_map("examples/curies.yaml")
print(mgr)
for p in mgr.all_property():
print("{:s} '{:s}' TR: '{:b}'".format(p.id, p.label, p.is_transitive))
for c in mgr.all_cls():
if not c.label:
continue
if c.definition:
print("{:s} '{:s}' DEF: '{:s}'".format(c.id, c.label, c.definition))
else:
print("{:s} '{:s}'".format(c.id, c.label))
for s in c.exactSynonyms:
print(" AKA: {:s}".format(s))
for s in c.superclasses():
print(" SUPER: {:s} '{:s}'".format(s.id, s.label))
for s in c.svf_superclasses(partOf):
print(" PARTOF: {:s} '{:s}'".format(str(s), s.label))
def main():
print("Welcome:")
p = OWLParser()
mgr = p.parse("examples/ceph.owl")
mgr.load_prefix_map("examples/curies.yaml")
print(mgr)
for p in mgr.all_property():
print("{:s} '{:s}' TR: '{:b}'".format(p.id, p.label, p.is_transitive))
for c in mgr.all_cls():
if not c.label:
continue
if c.definition:
print("{:s} '{:s}' DEF: '{:s}'".format(c.id, c.label,
c.definition))
else:
print("{:s} '{:s}'".format(c.id, c.label))
for s in c.exactSynonyms:
print(" AKA: {:s}".format(s))
for s in c.superclasses():
print(" SUPER: {:s} '{:s}'".format(s.id, s.label))
for s in c.svf_superclasses(partOf):
print(" PARTOF: {:s} '{:s}'".format(str(s), s.label))
def setUp(self):
p = OWLParser()
self.manager = p.parse("examples/mod.rdf")
self.manager.load_prefix_map("examples/curies.yaml")
self.model = Model(self.manager)
return
def setUp(self):
p = OWLParser()
self.manager = p.parse("examples/ceph.owl")
self.manager.load_prefix_map("examples/curies.yaml")
logger.info("LOADED")
return
def setUp(self):
p = OWLParser()
self.manager = p.parse("examples/ceph.owl")
self.manager.load_prefix_map("examples/curies.yaml")
logger.info("LOADED")
return
import unittest
from legolib.rdf.OWLParser import OWLParser
import rdflib
from rdflib import Namespace
from rdflib.namespace import RDF
from rdflib.namespace import SKOS
RO = Namespace('http://purl.obolibrary.org/obo/RO_')
BFO = Namespace('http://purl.obolibrary.org/obo/BFO_')
OBO = Namespace('http://purl.obolibrary.org/obo/')
partOf = OBO.BFO_0000050
owlparser = OWLParser()
def main():
parser = argparse.ArgumentParser(description='Lego'
'Client lib for Lego',
formatter_class=argparse.RawTextHelpFormatter)
parser.add_argument('-t', '--to', type=str, required=False,
help='Renderer')
parser.add_argument('-p', '--prefixes', type=str, required=False,
help='Prefix map file')
subparsers = parser.add_subparsers(dest='subcommand', help='sub-command help')
