def initialize(self, dataunit, channels, timepoints):
"""
Set initial values for settings based on
number of channels and timepoints
"""
DataUnitSettings.initialize(self, dataunit, channels, timepoints)
for i in range(channels):
tf = vtkbxd.vtkIntensityTransferFunction()
self.setCounted("IntensityTransferFunction", i, tf, 0)
self.set("PreviewChannel", 1)
def initialize(self, dataunit, channels, timepoints):
"""
Set initial values for settings based on
number of channels and timepoints
"""
DataUnitSettings.initialize(self, dataunit, channels, timepoints)
for i in range(channels):
tf = vtkbxd.vtkIntensityTransferFunction()
self.setCounted("IntensityTransferFunction", i, tf, 0)
self.set("PreviewChannel", 1)
def initialize(self, dataunit, channels, timepoints):
"""
Set initial values for settings based on
number of channels and timepoints
"""
DataUnitSettings.initialize(self, dataunit, channels, timepoints)
print "Initializing colocalization for %d channels" % channels
self.set("ColocalizationDepth", dataunit.getBitDepth())
if hasattr(dataunit, "getScalarRange"):
minval, maxval = dataunit.getScalarRange()
else:
minval, maxval = dataunit.getSourceDataUnits()[0].getScalarRange()
print "Initializing channels, maxval=", maxval
for i in range(channels):
self.setCounted("ColocalizationLowerThreshold", i, maxval / 2, 0)
self.setCounted("ColocalizationUpperThreshold", i, maxval, 0)
ctf = vtk.vtkColorTransferFunction()
ctf.AddRGBPoint(0, 0, 0, 0)
ctf.AddRGBPoint(maxval, 1.0, 1.0, 1.0)
self.set("ColorTransferFunction", ctf)
self.set("OutputScalar", maxval)
def initialize(self, dataunit, channels, timepoints):
"""
Set initial values for settings based on
number of channels and timepoints
"""
DataUnitSettings.initialize(self, dataunit, channels, timepoints)
print "Initializing colocalization for %d channels" % channels
self.set("ColocalizationDepth", dataunit.getBitDepth())
if hasattr(dataunit, "getScalarRange"):
minval, maxval = dataunit.getScalarRange()
else:
minval, maxval = dataunit.getSourceDataUnits()[0].getScalarRange()
print "Initializing channels, maxval=", maxval
for i in range(channels):
self.setCounted("ColocalizationLowerThreshold", i, maxval / 2, 0)
self.setCounted("ColocalizationUpperThreshold", i, maxval, 0)
ctf = vtk.vtkColorTransferFunction()
ctf.AddRGBPoint(0, 0, 0, 0)
ctf.AddRGBPoint(maxval, 1.0, 1.0, 1.0)
self.set("ColorTransferFunction", ctf)
self.set("OutputScalar", maxval)
def initialize(self, dataunit, channels, timepoints):
"""
Set initial values for settings based on
number of channels and timepoints
"""
DataUnitSettings.initialize(self, dataunit, channels, timepoints)
ctf = self.get("ColorTransferFunction")
if hasattr(dataunit, "getScalarRange"):
minval, maxval = dataunit.getScalarRange()
bitdepth = dataunit.getBitDepth()
else:
minval, maxval = dataunit.getSourceDataUnits()[0].getScalarRange()
bitdepth = dataunit.getSourceDataUnits()[0].getBitDepth()
minval = min(0, minval)
maxval = max(2**bitdepth - 1, maxval)
for i in range(timepoints):
tf = vtkbxd.vtkIntensityTransferFunction()
tf.SetRangeMax(maxval)
self.setCounted("IntensityTransferFunctions", i, tf, 0)
def initialize(self, dataunit, channels, timepoints):
"""
Set initial values for settings based on
number of channels and timepoints
"""
DataUnitSettings.initialize(self, dataunit, channels, timepoints)
ctf = self.get("ColorTransferFunction")
if hasattr(dataunit, "getScalarRange"):
minval, maxval = dataunit.getScalarRange()
bitdepth = dataunit.getBitDepth()
else:
minval, maxval = dataunit.getSourceDataUnits()[0].getScalarRange()
bitdepth = dataunit.getSourceDataUnits()[0].getBitDepth()
minval = min(0,minval)
maxval = max(2**bitdepth-1, maxval)
for i in range(timepoints):
tf = vtkbxd.vtkIntensityTransferFunction()
tf.SetRangeMax(maxval)
self.setCounted("IntensityTransferFunctions", i, tf, 0)
