def setUp(self): InitDb(URI, module=dbapi2) self.sess = Session() self.M = Medline(1, 'MEDLINE', 'Journal', 'PubDate', date.today()) self.sess.add(self.M) self.klass = Chemical self.entity = namedtuple('Chemical', 'pmid idx name') self.defaults = self.entity(1, 1, 'chem')
def setUp(self): InitDb(URI, module=dbapi2) self.sess = Session() self.M = Medline(1, 'MEDLINE', 'Journal', 'PubDate', date.today()) self.sess.add(self.M) self.klass = PublicationType self.entity = namedtuple('PublicationType', 'pmid value') self.defaults = self.entity(1, 'type')
def setUp(self): InitDb(URI, module=dbapi2) self.sess = Session() self.M = Medline(1, 'MEDLINE', 'Journal', 'PubDate', date.today()) self.sess.add(self.M) self.klass = Database self.entity = namedtuple('Database', 'pmid name accession') self.defaults = self.entity(1, 'name', 'accession')
def setUp(self): InitDb(URI, module=dbapi2) self.sess = Session() self.M = Medline(1, 'MEDLINE', 'Journal', 'PubDate', date.today()) self.sess.add(self.M) self.klass = Identifier self.entity = namedtuple('Identifier', 'pmid namespace value') self.defaults = self.entity(1, 'ns', 'id')
def setUp(self): InitDb(URI, module=dbapi2) self.sess = Session() self.klass = Medline self.entity = namedtuple('Medline', 'pmid status journal pub_date created') self.defaults = self.entity(1, 'MEDLINE', 'journal', 'published', date.today())
def setUp(self): InitDb(URI, module=dbapi2) self.sess = Session() self.M = Medline(1, 'MEDLINE', 'Journal', 'PubDate', date.today()) self.sess.add(self.M) self.klass = Author self.entity = namedtuple('Author', 'pmid pos name') self.defaults = self.entity(1, 1, 'last')
def setUp(self): InitDb(URI, module=dbapi2) self.sess = Session() self.M = Medline(1, 'MEDLINE', 'Journal', 'PubDate', date.today()) self.sess.add(self.M) self.klass = Keyword self.entity = namedtuple('Keyword', 'pmid owner cnt name') self.defaults = self.entity(1, 'NASA', 1, 'keyword')
def setUp(self): InitDb(URI, module=dbapi2) self.sess = Session() self.M = DefaultCitation() self.sess.add(self.M) self.klass = Keyword self.entity = namedtuple('Keyword', 'pmid owner cnt name') self.defaults = self.entity(1, 'NASA', 1, 'keyword')
def setUp(self): InitDb(URI, module=dbapi2) self.sess = Session() self.M = Medline(1, 'MEDLINE', 'Journal', 'PubDate', date.today()) self.sess.add(self.M) self.klass = Section self.entity = namedtuple('Section', 'pmid seq name content') self.defaults = self.entity(1, 1, 'Title', 'The Title')
def setUp(self): InitDb(URI, module=dbapi2) self.sess = Session() self.M = DefaultCitation() self.sess.add(self.M) self.klass = Chemical self.entity = namedtuple('Chemical', 'pmid idx name') self.defaults = self.entity(1, 1, 'chem')
def setUp(self): InitDb(URI, module=dbapi2) self.sess = Session() self.M = DefaultCitation() self.sess.add(self.M) self.klass = PublicationType self.entity = namedtuple('PublicationType', 'pmid value') self.defaults = self.entity(1, 'type')
def setUp(self): InitDb(URI, module=dbapi2) self.sess = Session() self.M = DefaultCitation() self.sess.add(self.M) self.klass = Database self.entity = namedtuple('Database', 'pmid name accession') self.defaults = self.entity(1, 'name', 'accession')
def setUp(self): InitDb(URI, module=dbapi2) self.sess = Session() self.M = DefaultCitation() self.sess.add(self.M) self.klass = Identifier self.entity = namedtuple('Identifier', 'pmid namespace value') self.defaults = self.entity(1, 'ns', 'id')
def setUp(self): InitDb(URI, module=dbapi2) self.sess = Session() self.klass = Citation self.entity = namedtuple('Citation', 'pmid status title journal pub_date created') self.defaults = self.entity(1, 'MEDLINE', 'title', 'journal', '1990 published', date.today())
def setUp(self): InitDb(URI, module=dbapi2) self.sess = Session() self.M = DefaultCitation() self.sess.add(self.M) self.klass = Author self.entity = namedtuple('Author', 'pmid pos name') self.defaults = self.entity(1, 1, 'last')
def setUp(self): InitDb(URI, module=dbapi2) self.sess = Session() self.M = DefaultCitation() self.sess.add(self.M) self.klass = Descriptor self.entity = namedtuple('Descriptor', 'pmid num name') self.defaults = self.entity(1, 1, 'name')
def setUp(self): InitDb(URI, module=dbapi2) self.sess = Session() self.M = DefaultCitation() self.sess.add(self.M) self.sess.add(Abstract(1, 'NLM')) self.klass = Section self.entity = namedtuple('Section', 'pmid source seq name content') self.defaults = self.entity(1, 'NLM', 1, 'Title', 'The Title')
def setUp(self): InitDb(URI, module=dbapi2) self.sess = Session() self.M = DefaultCitation() self.sess.add(self.M) self.D = Descriptor(1, 1, 'd_name', True) self.sess.add(self.D) self.klass = Qualifier self.entity = namedtuple('Qualifier', 'pmid num sub name') self.defaults = self.entity(1, 1, 1, 'name')
def setUp(self): InitDb(URI, module=dbapi2) self.sess = Session() self.M = Medline(1, 'MEDLINE', 'Journal', 'PubDate', date.today()) self.sess.add(self.M) self.D = Descriptor(1, 1, 'd_name', True) self.sess.add(self.D) self.klass = Qualifier self.entity = namedtuple('Qualifier', 'pmid num sub name') self.defaults = self.entity(1, 1, 1, 'name')
def testUsingURL(self): InitDb(URL('sqlite'), module=dbapi2) self.assertEqual('sqlite', Session().connection().dialect.name)