def setUp(self):
InitDb(URI, module=dbapi2)
self.sess = Session()
self.M = Medline(1, 'MEDLINE', 'Journal', 'PubDate', date.today())
self.sess.add(self.M)
self.klass = Chemical
self.entity = namedtuple('Chemical', 'pmid idx name')
self.defaults = self.entity(1, 1, 'chem')
def setUp(self):
InitDb(URI, module=dbapi2)
self.sess = Session()
self.M = Medline(1, 'MEDLINE', 'Journal', 'PubDate', date.today())
self.sess.add(self.M)
self.klass = PublicationType
self.entity = namedtuple('PublicationType', 'pmid value')
self.defaults = self.entity(1, 'type')
def setUp(self):
InitDb(URI, module=dbapi2)
self.sess = Session()
self.M = Medline(1, 'MEDLINE', 'Journal', 'PubDate', date.today())
self.sess.add(self.M)
self.klass = Database
self.entity = namedtuple('Database', 'pmid name accession')
self.defaults = self.entity(1, 'name', 'accession')
def setUp(self):
InitDb(URI, module=dbapi2)
self.sess = Session()
self.M = Medline(1, 'MEDLINE', 'Journal', 'PubDate', date.today())
self.sess.add(self.M)
self.klass = Identifier
self.entity = namedtuple('Identifier', 'pmid namespace value')
self.defaults = self.entity(1, 'ns', 'id')
def setUp(self):
InitDb(URI, module=dbapi2)
self.sess = Session()
self.klass = Medline
self.entity = namedtuple('Medline',
'pmid status journal pub_date created')
self.defaults = self.entity(1, 'MEDLINE', 'journal', 'published',
date.today())
def setUp(self):
InitDb(URI, module=dbapi2)
self.sess = Session()
self.M = Medline(1, 'MEDLINE', 'Journal', 'PubDate', date.today())
self.sess.add(self.M)
self.klass = Author
self.entity = namedtuple('Author', 'pmid pos name')
self.defaults = self.entity(1, 1, 'last')
def setUp(self):
InitDb(URI, module=dbapi2)
self.sess = Session()
self.M = Medline(1, 'MEDLINE', 'Journal', 'PubDate', date.today())
self.sess.add(self.M)
self.klass = Keyword
self.entity = namedtuple('Keyword', 'pmid owner cnt name')
self.defaults = self.entity(1, 'NASA', 1, 'keyword')
def setUp(self):
InitDb(URI, module=dbapi2)
self.sess = Session()
self.M = DefaultCitation()
self.sess.add(self.M)
self.klass = Keyword
self.entity = namedtuple('Keyword', 'pmid owner cnt name')
self.defaults = self.entity(1, 'NASA', 1, 'keyword')
def setUp(self):
InitDb(URI, module=dbapi2)
self.sess = Session()
self.M = Medline(1, 'MEDLINE', 'Journal', 'PubDate', date.today())
self.sess.add(self.M)
self.klass = Section
self.entity = namedtuple('Section', 'pmid seq name content')
self.defaults = self.entity(1, 1, 'Title', 'The Title')
def setUp(self):
InitDb(URI, module=dbapi2)
self.sess = Session()
self.M = DefaultCitation()
self.sess.add(self.M)
self.klass = Chemical
self.entity = namedtuple('Chemical', 'pmid idx name')
self.defaults = self.entity(1, 1, 'chem')
def setUp(self):
InitDb(URI, module=dbapi2)
self.sess = Session()
self.M = DefaultCitation()
self.sess.add(self.M)
self.klass = PublicationType
self.entity = namedtuple('PublicationType', 'pmid value')
self.defaults = self.entity(1, 'type')
def setUp(self):
InitDb(URI, module=dbapi2)
self.sess = Session()
self.M = DefaultCitation()
self.sess.add(self.M)
self.klass = Database
self.entity = namedtuple('Database', 'pmid name accession')
self.defaults = self.entity(1, 'name', 'accession')
def setUp(self):
InitDb(URI, module=dbapi2)
self.sess = Session()
self.M = DefaultCitation()
self.sess.add(self.M)
self.klass = Identifier
self.entity = namedtuple('Identifier', 'pmid namespace value')
self.defaults = self.entity(1, 'ns', 'id')
def setUp(self):
InitDb(URI, module=dbapi2)
self.sess = Session()
self.klass = Citation
self.entity = namedtuple('Citation',
'pmid status title journal pub_date created')
self.defaults = self.entity(1, 'MEDLINE', 'title', 'journal',
'1990 published', date.today())
def setUp(self):
InitDb(URI, module=dbapi2)
self.sess = Session()
self.M = DefaultCitation()
self.sess.add(self.M)
self.klass = Author
self.entity = namedtuple('Author', 'pmid pos name')
self.defaults = self.entity(1, 1, 'last')
def setUp(self):
InitDb(URI, module=dbapi2)
self.sess = Session()
self.M = DefaultCitation()
self.sess.add(self.M)
self.klass = Descriptor
self.entity = namedtuple('Descriptor', 'pmid num name')
self.defaults = self.entity(1, 1, 'name')
def setUp(self):
InitDb(URI, module=dbapi2)
self.sess = Session()
self.M = DefaultCitation()
self.sess.add(self.M)
self.sess.add(Abstract(1, 'NLM'))
self.klass = Section
self.entity = namedtuple('Section', 'pmid source seq name content')
self.defaults = self.entity(1, 'NLM', 1, 'Title', 'The Title')
def setUp(self):
InitDb(URI, module=dbapi2)
self.sess = Session()
self.M = DefaultCitation()
self.sess.add(self.M)
self.D = Descriptor(1, 1, 'd_name', True)
self.sess.add(self.D)
self.klass = Qualifier
self.entity = namedtuple('Qualifier', 'pmid num sub name')
self.defaults = self.entity(1, 1, 1, 'name')
def setUp(self):
InitDb(URI, module=dbapi2)
self.sess = Session()
self.M = Medline(1, 'MEDLINE', 'Journal', 'PubDate', date.today())
self.sess.add(self.M)
self.D = Descriptor(1, 1, 'd_name', True)
self.sess.add(self.D)
self.klass = Qualifier
self.entity = namedtuple('Qualifier', 'pmid num sub name')
self.defaults = self.entity(1, 1, 1, 'name')
def testUsingURL(self):
InitDb(URL('sqlite'), module=dbapi2)
self.assertEqual('sqlite', Session().connection().dialect.name)
