def test_has_finite_radius_neurites_good_data():
files = [os.path.join(SWC_PATH, f)
for f in ['Neuron.swc',
'Single_apical.swc',
'Single_basal.swc',
'Single_axon.swc']]
files.append(os.path.join(H5V1_PATH, 'Neuron_2_branch.h5'))
for f in files:
ok, ids = check.has_all_finite_radius_neurites(load_data(f))
nt.ok_(ok)
nt.ok_(len(ids) == 0)
def test_has_finite_radius_neurites_good_data():
files = [
os.path.join(SWC_PATH, f) for f in [
'Neuron.swc', 'Single_apical.swc', 'Single_basal.swc',
'Single_axon.swc'
]
]
files.append(os.path.join(H5V1_PATH, 'Neuron_2_branch.h5'))
for f in files:
ok, ids = check.has_all_finite_radius_neurites(load_data(f))
nt.ok_(ok)
nt.ok_(len(ids) == 0)
def test_has_finite_radius_neurites_bad_data():
f = os.path.join(SWC_PATH, 'Neuron_zero_radius.swc')
ok, ids = check.has_all_finite_radius_neurites(load_data(f))
nt.ok_(not ok)
nt.ok_(ids == [194, 210, 246, 304, 493])
def test_has_finite_radius_neurites_bad_data():
f = os.path.join(SWC_PATH, 'Neuron_zero_radius.swc')
ok, ids = check.has_all_finite_radius_neurites(load_data(f))
nt.ok_(not ok)
nt.ok_(ids == [194, 210, 246, 304, 493])