def test_has_finite_radius_neurites_good_data(): files = [os.path.join(SWC_PATH, f) for f in ['Neuron.swc', 'Single_apical.swc', 'Single_basal.swc', 'Single_axon.swc']] files.append(os.path.join(H5V1_PATH, 'Neuron_2_branch.h5')) for f in files: ok, ids = check.has_all_finite_radius_neurites(load_data(f)) nt.ok_(ok) nt.ok_(len(ids) == 0)
def test_has_finite_radius_neurites_good_data(): files = [ os.path.join(SWC_PATH, f) for f in [ 'Neuron.swc', 'Single_apical.swc', 'Single_basal.swc', 'Single_axon.swc' ] ] files.append(os.path.join(H5V1_PATH, 'Neuron_2_branch.h5')) for f in files: ok, ids = check.has_all_finite_radius_neurites(load_data(f)) nt.ok_(ok) nt.ok_(len(ids) == 0)
def test_has_finite_radius_neurites_bad_data(): f = os.path.join(SWC_PATH, 'Neuron_zero_radius.swc') ok, ids = check.has_all_finite_radius_neurites(load_data(f)) nt.ok_(not ok) nt.ok_(ids == [194, 210, 246, 304, 493])