class ProvenanceContext(object):
def __init__(self):
self.config = Configuration()
self.deps = Dependencies(self.config)
def add(self, filepath, transient=False, provenance=None):
"""See :py:mod:`niprov.adding` """
return niprov.adding.add(filepath, transient, provenance, self.deps)
def approve(self, filepath):
"""See :py:mod:`niprov.approval` """
return niprov.approval.approve(filepath, dependencies=self.deps)
def backup(self):
"""See :py:mod:`niprov.exporting` """
return niprov.exporting.backup(self.deps)
def compare(self, file1, file2):
"""See :py:mod:`niprov.comparing` """
return niprov.comparing.compare(file1, file2, dependencies=self.deps)
def discover(self, root):
"""See :py:mod:`niprov.discovery` """
return niprov.discovery.discover(root, dependencies=self.deps)
def export(self, images, medium, form, pipeline=False):
"""See :py:mod:`niprov.exporting` """
return niprov.exporting.export(images, medium, form, pipeline,
self.deps)
def get(self):
"""See :py:mod:`niprov.querying` """
return self.deps.getQuery()
def importp(self, fpath):
"""See :py:mod:`niprov.importing` """
return niprov.importing.importp(fpath, self.deps)
def inspect(self, location):
"""See :py:mod:`niprov.inspection` """
return niprov.inspection.inspect(location, dependencies=self.deps)
def log(self, new, transformation, parents, code=None, logtext=None,
transient=False, script=None, user=None, provenance=None,
opts=None):
"""See :py:mod:`niprov.plogging` """
return niprov.plogging.log(new, transformation, parents, code, logtext,
transient, script, user, provenance, opts, self.deps)
def markForApproval(self, files):
"""See :py:mod:`niprov.approval` """
return niprov.approval.markForApproval(files, dependencies=self.deps)
def markedForApproval(self):
"""See :py:mod:`niprov.approval` """
return niprov.approval.markedForApproval(dependencies=self.deps)
def print_(self, images, pipeline=False):
"""See :py:mod:`niprov.exporting` """
return niprov.exporting.print_(images, pipeline, self.deps)
def renameDicoms(self, dicomdir):
"""See :py:mod:`niprov.renaming` """
return niprov.renaming.renameDicoms(dicomdir, dependencies=self.deps)
def record(self, command, new=None, parents=None, transient=False,
args=None, kwargs=None, user=None, opts=None):
"""See :py:mod:`niprov.recording` """
return niprov.recording.record(command, new, parents, transient,
args, kwargs, user, opts, self.deps)
def search(self, text):
"""See :py:mod:`niprov.searching` """
return niprov.searching.search(text, dependencies=self.deps)
def selectApproved(self, files):
"""See :py:mod:`niprov.approval` """
return niprov.approval.selectApproved(files, dependencies=self.deps)
def view(self, images, pipeline=False):
"""See :py:mod:`niprov.exporting` """
return niprov.exporting.view(images, pipeline, self.deps)
def test_provides_Query(self):
from niprov.dependencies import Dependencies
from niprov.querying import Query
dependencies = Dependencies()
self.assertIsInstance(dependencies.getQuery(), Query)
def test_provides_Query(self):
from niprov.dependencies import Dependencies
from niprov.querying import Query
dependencies = Dependencies()
self.assertIsInstance(dependencies.getQuery(), Query)
