def test_FmriRealign4d_inputs(): input_map = dict(between_loops=dict(usedefault=True, ), ignore_exception=dict(nohash=True, usedefault=True, ), in_file=dict(mandatory=True, ), loops=dict(usedefault=True, ), slice_order=dict(requires=['time_interp'], ), speedup=dict(usedefault=True, ), start=dict(usedefault=True, ), time_interp=dict(requires=['slice_order'], ), tr=dict(mandatory=True, ), tr_slices=dict(requires=['time_interp'], ), ) inputs = FmriRealign4d.input_spec() for key, metadata in input_map.items(): for metakey, value in metadata.items(): yield assert_equal, getattr(inputs.traits()[key], metakey), value
def __init__(self, in_file=['path'], tr=1.0, **options): from nipype.interfaces.nipy.preprocess import FmriRealign4d realigner = FmriRealign4d() realigner.inputs.in_file = in_file realigner.inputs.tr = tr for ef in options: setattr(realigner.inputs, ef, options[ef]) self.res = realigner.run()
def test_FmriRealign4d_outputs(): output_map = dict(out_file=dict(), par_file=dict(), ) outputs = FmriRealign4d.output_spec() for key, metadata in output_map.items(): for metakey, value in metadata.items(): yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_FmriRealign4d_outputs(): output_map = dict( out_file=dict(), par_file=dict(), ) outputs = FmriRealign4d.output_spec() for key, metadata in output_map.items(): for metakey, value in metadata.items(): yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_FmriRealign4d_inputs(): input_map = dict( between_loops=dict(usedefault=True, ), ignore_exception=dict( nohash=True, usedefault=True, ), in_file=dict(mandatory=True, ), loops=dict(usedefault=True, ), slice_order=dict(requires=['time_interp'], ), speedup=dict(usedefault=True, ), start=dict(usedefault=True, ), time_interp=dict(requires=['slice_order'], ), tr=dict(mandatory=True, ), tr_slices=dict(requires=['time_interp'], ), ) inputs = FmriRealign4d.input_spec() for key, metadata in input_map.items(): for metakey, value in metadata.items(): yield assert_equal, getattr(inputs.traits()[key], metakey), value