def test_FmriRealign4d_inputs():
input_map = dict(between_loops=dict(usedefault=True,
),
ignore_exception=dict(nohash=True,
usedefault=True,
),
in_file=dict(mandatory=True,
),
loops=dict(usedefault=True,
),
slice_order=dict(requires=['time_interp'],
),
speedup=dict(usedefault=True,
),
start=dict(usedefault=True,
),
time_interp=dict(requires=['slice_order'],
),
tr=dict(mandatory=True,
),
tr_slices=dict(requires=['time_interp'],
),
)
inputs = FmriRealign4d.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value
def __init__(self, in_file=['path'], tr=1.0, **options):
from nipype.interfaces.nipy.preprocess import FmriRealign4d
realigner = FmriRealign4d()
realigner.inputs.in_file = in_file
realigner.inputs.tr = tr
for ef in options:
setattr(realigner.inputs, ef, options[ef])
self.res = realigner.run()
def test_FmriRealign4d_outputs():
output_map = dict(out_file=dict(),
par_file=dict(),
)
outputs = FmriRealign4d.output_spec()
for key, metadata in output_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_FmriRealign4d_outputs():
output_map = dict(
out_file=dict(),
par_file=dict(),
)
outputs = FmriRealign4d.output_spec()
for key, metadata in output_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_FmriRealign4d_inputs():
input_map = dict(
between_loops=dict(usedefault=True, ),
ignore_exception=dict(
nohash=True,
usedefault=True,
),
in_file=dict(mandatory=True, ),
loops=dict(usedefault=True, ),
slice_order=dict(requires=['time_interp'], ),
speedup=dict(usedefault=True, ),
start=dict(usedefault=True, ),
time_interp=dict(requires=['slice_order'], ),
tr=dict(mandatory=True, ),
tr_slices=dict(requires=['time_interp'], ),
)
inputs = FmriRealign4d.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value
