'estimate_id', 'sample_name', 'data_set_id', 'experiment_id'
]
validate_df = retrieve_experimental_data_from_file(
data_file_name=validation_file_name,
multi_index_label=validate_index_labels)
# validation plot
original_experiment_file = os.path.join(os.getcwd(), 'exp/experiments_mwc')
exp_df = retrieve_experimental_data_from_file(
data_file_name=original_experiment_file,
multi_index_label=['sample_name', 'experiment_id'])
all_c_info, all_f_info = process_validation_info(validate_df, exp_df)
validation_plot({
"concentration": all_c_info,
"flux": all_f_info
},
flux=True,
flux_id=['v1', 'v2', 'v3', 'v5'],
experiment_dist=False)
# get parameter value plot
parameter_values_plot(all_parameter_info,
default_parameter_values,
violin=True,
box=False)
# get identifiability plot
identifiability_plot(all_parameter_info)
# get experiment info plot
exp_info_plot(all_parameter_info)
validate_index_labels = [
'estimate_id', 'sample_name', 'data_set_id', 'experiment_id'
]
validate_df = retrieve_experimental_data_from_file(
data_file_name=validation_file_name,
multi_index_label=validate_index_labels)
# validation plot
original_experiment_file = os.path.join(os.getcwd(), 'exp/experiments')
exp_df = retrieve_experimental_data_from_file(
data_file_name=original_experiment_file,
multi_index_label=['sample_name', 'experiment_id'])
all_c_info, all_f_info = process_validation_info(validate_df, exp_df)
validation_plot({
"concentration": all_c_info,
"flux": all_f_info
},
flux=True,
flux_id=['v1', 'v2', 'v3', 'v5'])
# get parameter value plot
parameter_values_plot(all_parameter_info,
default_parameter_values,
violin=True,
box=False)
# get identifiability plot
identifiability_plot(all_parameter_info)
# get experiment info plot
exp_info_plot(all_parameter_info)