Python validation_plotの例

コード例 #1

ファイル: v3_mwc_ck_script.py プロジェクト: shyamsrinivasan/ident

    'estimate_id', 'sample_name', 'data_set_id', 'experiment_id'
]
validate_df = retrieve_experimental_data_from_file(
    data_file_name=validation_file_name,
    multi_index_label=validate_index_labels)
# validation plot
original_experiment_file = os.path.join(os.getcwd(), 'exp/experiments_mwc')
exp_df = retrieve_experimental_data_from_file(
    data_file_name=original_experiment_file,
    multi_index_label=['sample_name', 'experiment_id'])

all_c_info, all_f_info = process_validation_info(validate_df, exp_df)
validation_plot({
    "concentration": all_c_info,
    "flux": all_f_info
},
                flux=True,
                flux_id=['v1', 'v2', 'v3', 'v5'],
                experiment_dist=False)

# get parameter value plot
parameter_values_plot(all_parameter_info,
                      default_parameter_values,
                      violin=True,
                      box=False)

# get identifiability plot
identifiability_plot(all_parameter_info)

# get experiment info plot
exp_info_plot(all_parameter_info)

コード例 #2

ファイル: v3_ck_script.py プロジェクト: shyamsrinivasan/ident

validate_index_labels = [
    'estimate_id', 'sample_name', 'data_set_id', 'experiment_id'
]
validate_df = retrieve_experimental_data_from_file(
    data_file_name=validation_file_name,
    multi_index_label=validate_index_labels)
# validation plot
original_experiment_file = os.path.join(os.getcwd(), 'exp/experiments')
exp_df = retrieve_experimental_data_from_file(
    data_file_name=original_experiment_file,
    multi_index_label=['sample_name', 'experiment_id'])

all_c_info, all_f_info = process_validation_info(validate_df, exp_df)
validation_plot({
    "concentration": all_c_info,
    "flux": all_f_info
},
                flux=True,
                flux_id=['v1', 'v2', 'v3', 'v5'])

# get parameter value plot
parameter_values_plot(all_parameter_info,
                      default_parameter_values,
                      violin=True,
                      box=False)

# get identifiability plot
identifiability_plot(all_parameter_info)

# get experiment info plot
exp_info_plot(all_parameter_info)