Esempi in Python per Utils.scanCMH

Esempio n. 1

File: pipeline.py Progetto: airanmehr/bio

'''
Copyleft Nov 13, 2016 Arya Iranmehr, PhD Student, Bafna Lab, UC San Diego,  Email: [email protected]
'''
import numpy as np;

np.set_printoptions(linewidth=200, precision=5, suppress=True)
import pandas as pd;

pd.options.display.max_rows = 20;
pd.options.display.expand_frame_repr = False
import seaborn as sns
import pylab as plt;
import matplotlib as mpl
import os;
import popgen.Util as utl
import popgen.hypoxia.Utils as hutl
# utl.createAnnotation(vcf='/home/arya/storage/Data/Dmelanogaster/Hypoxia/pops/all.vcf')

hutl.scanCMH()
hutl.scanSFSAll()
hutl.saveAnnotationUCSC()