''' Copyleft Nov 13, 2016 Arya Iranmehr, PhD Student, Bafna Lab, UC San Diego, Email: [email protected] ''' import numpy as np; np.set_printoptions(linewidth=200, precision=5, suppress=True) import pandas as pd; pd.options.display.max_rows = 20; pd.options.display.expand_frame_repr = False import seaborn as sns import pylab as plt; import matplotlib as mpl import os; import popgen.Util as utl import popgen.hypoxia.Utils as hutl # utl.createAnnotation(vcf='/home/arya/storage/Data/Dmelanogaster/Hypoxia/pops/all.vcf') hutl.scanCMH() hutl.scanSFSAll() hutl.saveAnnotationUCSC()