def setUp(self):
try :
B.importGenome("Human.GRCh37.75_Y-Only.tar.gz")
except KeyError :
print "--> Seems to already exist in db"
try :
B.importSNPs("Human_agnostic.dummySRY.tar.gz")
except KeyError :
print "--> Seems to already exist in db"
self.ref = Genome(name = 'GRCh37.75_Y-Only')
def runTests():
try:
B.importGenome("Human.GRCh37.75_Y-Only.tar.gz")
except KeyError:
print "--> Seems to already exist in db"
try:
B.importSNPs("Human_agnostic.dummySRY.tar.gz")
except KeyError:
print "--> Seems to already exist in db"
unittest.main()
def runTests():
try:
B.importGenome("Human.GRCh37.75_Y-Only.tar.gz")
except KeyError:
deleteGenome("human", "GRCh37.75_Y-Only")
B.importGenome("Human.GRCh37.75_Y-Only.tar.gz")
print("--> Seems to already exist in db")
try:
B.importSNPs("Human_agnostic.dummySRY.tar.gz")
except KeyError:
deleteSNPs("dummySRY_AGN")
B.importSNPs("Human_agnostic.dummySRY.tar.gz")
print("--> Seems to already exist in db")
try:
B.importSNPs("Human_agnostic.dummySRY_indels")
except KeyError:
deleteSNPs("dummySRY_AGN_indels")
B.importSNPs("Human_agnostic.dummySRY_indels")
print("--> Seems to already exist in db")
# import time
# time.sleep(10)
unittest.main()