Python importSNPsの例

コード例 #1

ファイル: test_genome.py プロジェクト: kdelmore/pyGeno

	def setUp(self):
		try :
			B.importGenome("Human.GRCh37.75_Y-Only.tar.gz")
		except KeyError :
			print "--> Seems to already exist in db"
     
		try :
			B.importSNPs("Human_agnostic.dummySRY.tar.gz")
		except KeyError :
			print "--> Seems to already exist in db"
		self.ref = Genome(name = 'GRCh37.75_Y-Only')

コード例 #2

ファイル: genome_tests.py プロジェクト: techscientist/pyGeno

def runTests():
    try:
        B.importGenome("Human.GRCh37.75_Y-Only.tar.gz")
    except KeyError:
        print "--> Seems to already exist in db"

    try:
        B.importSNPs("Human_agnostic.dummySRY.tar.gz")
    except KeyError:
        print "--> Seems to already exist in db"

    unittest.main()

コード例 #3

ファイル: test_genome.py プロジェクト: raonyguimaraes/pyGeno

def runTests():
    try:
        B.importGenome("Human.GRCh37.75_Y-Only.tar.gz")
    except KeyError:
        deleteGenome("human", "GRCh37.75_Y-Only")
        B.importGenome("Human.GRCh37.75_Y-Only.tar.gz")
        print("--> Seems to already exist in db")

    try:
        B.importSNPs("Human_agnostic.dummySRY.tar.gz")
    except KeyError:
        deleteSNPs("dummySRY_AGN")
        B.importSNPs("Human_agnostic.dummySRY.tar.gz")
        print("--> Seems to already exist in db")

    try:
        B.importSNPs("Human_agnostic.dummySRY_indels")
    except KeyError:
        deleteSNPs("dummySRY_AGN_indels")
        B.importSNPs("Human_agnostic.dummySRY_indels")
        print("--> Seems to already exist in db")
    # import time
    # time.sleep(10)
    unittest.main()