def convertAlignFileIntoPathFile( alignFile, pathFile ): alignFileHandler = open( alignFile, "r" ) pathFileHandler = open( pathFile, "w" ) iAlign = Align() countAlign = 0 while True: line = alignFileHandler.readline() if line == "": break countAlign += 1 iAlign.setFromString( line, "\t" ) pathFileHandler.write( "%i\t%s\n" % ( countAlign, iAlign.toString() ) ) alignFileHandler.close() pathFileHandler.close()
def toString(self): string = "%i" % ( self.id ) string += "\t%s" % (Align.toString(self)) return string