def convertAlignFileIntoPathFile( alignFile, pathFile ):
alignFileHandler = open( alignFile, "r" )
pathFileHandler = open( pathFile, "w" )
iAlign = Align()
countAlign = 0
while True:
line = alignFileHandler.readline()
if line == "":
break
countAlign += 1
iAlign.setFromString( line, "\t" )
pathFileHandler.write( "%i\t%s\n" % ( countAlign, iAlign.toString() ) )
alignFileHandler.close()
pathFileHandler.close()
def toString(self):
string = "%i" % ( self.id )
string += "\t%s" % (Align.toString(self))
return string
