def remote_env_remove(login_info, env_id, env_apps):
for app_name in env_apps:
print(f'Deleting {app_name}...')
remote_dir = f'~/.COMPSsApps/{env_id}/{app_name}'
remote_app_remove(login_info, remote_dir)
utils.ssh_run_commands(login_info, [
f'rm -rf ~/.COMPSsApps/{env_id}',
])
def remote_submit_job(login_info: str,
remote_dir: str,
app_args: str,
modules,
envars=None) -> None:
""" Execute the given command in the remote COMPSs environment.
:param cmd: Command to execute.
:returns: The execution stdout.
"""
enqueue_debug = '-d' if utils.is_debug() else ''
commands = [
f'cd {remote_dir}', *modules,
f'enqueue_compss {enqueue_debug} {app_args}'
]
if envars:
commands = [f'export {var}' for var in envars] + commands
if utils.is_debug():
print('********* DEBUG *********')
print('Remote submit job commands:')
for cmd in commands:
print('\t', '->', cmd)
print('***************************')
stdout = utils.ssh_run_commands(login_info, commands)
job_id = stdout.strip().split('\n')[-1].split(' ')[-1]
print('Job submitted:', job_id)
return job_id
def remote_cancel_job(login_info: str, job_id: str, modules):
commands = [
*modules,
f'python3 ~/.COMPSs/job_scripts/cancel.py {job_id}',
]
stdout = utils.ssh_run_commands(login_info, commands).strip()
print(stdout)
def remote_app_deploy(app_dir: str,
login_info: str,
local_source: str,
remote_dest_dir: str = None):
print('Deploying app...')
utils.ssh_run_commands(login_info, [f'mkdir -p {app_dir}'])
cmd_copy_files = f"scp -r {local_source}/* {login_info}:'{app_dir}/'"
if os.path.isfile(local_source):
cmd_copy_files = cmd_copy_files.replace('/*', '')
subprocess.run(cmd_copy_files, shell=True)
if remote_dest_dir:
print('App deployed to', remote_dest_dir)
utils.ssh_run_commands(login_info, [
f'echo {remote_dest_dir} > {app_dir}/.compss',
f'mkdir -p {os.path.dirname(remote_dest_dir)}',
f'ln -s {app_dir} {remote_dest_dir}'
])
def remote_list_job(login_info: str, modules):
commands = [
*modules,
f'python3 ~/.COMPSs/job_scripts/find.py',
]
stdout = utils.ssh_run_commands(login_info, commands).strip()
if stdout != 'SUCCESS':
print(stdout)
else:
print('No jobs found')
def remote_list_apps(env_id: str, login_info: str, remote_home: str):
commands = [
f'[ ! -d "{remote_home}/.COMPSsApps/{env_id}" ] && echo "NO_APPS"',
f'ls ~/.COMPSsApps/{env_id}/',
]
stdout = utils.ssh_run_commands(login_info, commands).strip()
apps = stdout.split('\n')
if 'NO_APPS' in stdout or (len(apps) == 1 and apps[0] == ''):
return []
return apps
def remote_run_app(remote_dir: str, login_info: str, env_name: str,
command: str, modules):
commands = [f'cd {remote_dir}', *modules, command]
return utils.ssh_run_commands(login_info, commands)
def remote_app_remove(login_info: str, app_dir: str):
utils.ssh_run_commands(
login_info,
[f'cat {app_dir}/.compss | xargs rm -rf', f'rm -rf {app_dir}'])
def remote_exec_app(login_info: str, exec_cmd: str):
return utils.ssh_run_commands(login_info, [exec_cmd]).strip()
def remote_get_home(login_info: str):
return utils.ssh_run_commands(login_info, ['echo $HOME']).strip()
