Esempi in Python per import_mega_csv

Esempio n. 1

File: example_upgma.py Progetto: usoban/pylogenetics

import sys
sys.path.append('../')

from pylogen.treebuilder.upgma import upgma
from pylogen.util.data         import import_mega_csv

if len(sys.argv) > 1:
	names, distMtx = import_mega_csv(sys.argv[1])
	
	print upgma(distMtx, names) 
else:
	print "Please supply distance matrix CSV file as first argument"
	exit(1)

Esempio n. 2

File: example_neighbor_joining.py Progetto: usoban/pylogenetics

import sys
sys.path.append('../')

from pylogen.treebuilder.nj import neighbor_joining
from pylogen.util.data      import import_mega_csv

if len(sys.argv) > 1:

	names, distanceMatrix = import_mega_csv(sys.argv[1])
	
	print neighbor_joining(distanceMatrix, names) 
else:
	print "Please supply distance matrix CSV file as first argument"
	exit(1)