import sys sys.path.append('../') from pylogen.treebuilder.upgma import upgma from pylogen.util.data import import_mega_csv if len(sys.argv) > 1: names, distMtx = import_mega_csv(sys.argv[1]) print upgma(distMtx, names) else: print "Please supply distance matrix CSV file as first argument" exit(1)
import sys sys.path.append('../') from pylogen.treebuilder.nj import neighbor_joining from pylogen.util.data import import_mega_csv if len(sys.argv) > 1: names, distanceMatrix = import_mega_csv(sys.argv[1]) print neighbor_joining(distanceMatrix, names) else: print "Please supply distance matrix CSV file as first argument" exit(1)