def main():
option_parser, opts, args = parse_command_line_parameters(**script_info)
tree = parse_newick(open(opts.master_tree, 'U'))
support_file = open(opts.support)
bootstraps = parse_bootstrap_support(support_file)
support_file.close()
write_pdf_bootstrap_tree(tree, opts.output_file, bootstraps)
def main():
option_parser, opts, args = parse_command_line_parameters(**script_info)
tree = parse_newick(open(opts.master_tree, 'U'))
support_file = open(opts.support)
bootstraps = parse_bootstrap_support(support_file)
support_file.close()
write_pdf_bootstrap_tree(tree, opts.output_file, bootstraps)
def test_parse_bootstrap_support(self):
"""parse_distmat should read distmat correctly"""
input_txt = """#\ta\tb\tc.
#more comments here
node2\t0
17node\t0.11922
"""
lines = input_txt.splitlines()
exp = {'17node':0.11922, 'node2':0.00}
obs = parse_bootstrap_support(lines)
self.assertFloatEqual(obs, exp)
def test_parse_bootstrap_support(self):
"""parse_distmat should read distmat correctly"""
input_txt = """#\ta\tb\tc.
#more comments here
node2\t0
17node\t0.11922
"""
lines = input_txt.splitlines()
exp = {'17node': 0.11922, 'node2': 0.00}
obs = parse_bootstrap_support(lines)
self.assertFloatEqual(obs, exp)
