Exemplos de parse_bootstrap_support em Python

Exemplo n.º 1

Arquivo: make_bootstrapped_tree.py Projeto: Sandy4321/FizzyQIIME

def main():
    option_parser, opts, args = parse_command_line_parameters(**script_info)

    tree = parse_newick(open(opts.master_tree, 'U'))
    support_file = open(opts.support)
    bootstraps = parse_bootstrap_support(support_file)
    support_file.close()
    write_pdf_bootstrap_tree(tree, opts.output_file, bootstraps)

Exemplo n.º 2

Arquivo: make_bootstrapped_tree.py Projeto: ElDeveloper/qiime

def main():
    option_parser, opts, args = parse_command_line_parameters(**script_info)

    tree = parse_newick(open(opts.master_tree, 'U'))
    support_file = open(opts.support)
    bootstraps = parse_bootstrap_support(support_file)
    support_file.close()
    write_pdf_bootstrap_tree(tree, opts.output_file, bootstraps)

Exemplo n.º 3

Arquivo: test_parse.py Projeto: Ecogenomics/FrankenQIIME

    def test_parse_bootstrap_support(self):
        """parse_distmat should read distmat correctly"""
        input_txt = """#\ta\tb\tc.
#more comments here
node2\t0
17node\t0.11922
"""
        lines = input_txt.splitlines()
        exp = {'17node':0.11922, 'node2':0.00}
        obs = parse_bootstrap_support(lines)
        self.assertFloatEqual(obs, exp)

Exemplo n.º 4

    def test_parse_bootstrap_support(self):
        """parse_distmat should read distmat correctly"""
        input_txt = """#\ta\tb\tc.
#more comments here
node2\t0
17node\t0.11922
"""
        lines = input_txt.splitlines()
        exp = {'17node': 0.11922, 'node2': 0.00}
        obs = parse_bootstrap_support(lines)
        self.assertFloatEqual(obs, exp)