def test_set_clip_qual_left(self):
orig_header, orig_reads = parse_binary_sff(open(self.sff_fp), True)
orig_reads = list(orig_reads)
_, clip_reads = set_clip_qual_left((orig_header, orig_reads), 8)
for read, orig_read in zip(clip_reads, orig_reads):
self.assertEqual(read['clip_qual_left'], 9)
# Check that eveything else is the same between original
# reads and trimmed reads.
orig_read['clip_qual_left'] = 9
self.assertEqual(read, orig_read)
def test_set_clip_qual_left(self):
orig_header, orig_reads = parse_binary_sff(open(self.sff_fp), True)
orig_reads = list(orig_reads)
_, clip_reads = set_clip_qual_left((orig_header, orig_reads), 8)
for read, orig_read in zip(clip_reads, orig_reads):
self.assertEqual(read["clip_qual_left"], 9)
# Check that eveything else is the same between original
# reads and trimmed reads.
orig_read["clip_qual_left"] = 9
self.assertEqual(read, orig_read)