Python set_clip_qual_leftの例

コード例 #1

    def test_set_clip_qual_left(self):
        orig_header, orig_reads = parse_binary_sff(open(self.sff_fp), True)
        orig_reads = list(orig_reads)

        _, clip_reads = set_clip_qual_left((orig_header, orig_reads), 8)

        for read, orig_read in zip(clip_reads, orig_reads):
            self.assertEqual(read['clip_qual_left'], 9)
            # Check that eveything else is the same between original
            # reads and trimmed reads.
            orig_read['clip_qual_left'] = 9
            self.assertEqual(read, orig_read)

コード例 #2

ファイル: test_trim_sff_primers.py プロジェクト: johnchase/qiime

    def test_set_clip_qual_left(self):
        orig_header, orig_reads = parse_binary_sff(open(self.sff_fp), True)
        orig_reads = list(orig_reads)

        _, clip_reads = set_clip_qual_left((orig_header, orig_reads), 8)

        for read, orig_read in zip(clip_reads, orig_reads):
            self.assertEqual(read["clip_qual_left"], 9)
            # Check that eveything else is the same between original
            # reads and trimmed reads.
            orig_read["clip_qual_left"] = 9
            self.assertEqual(read, orig_read)