Esempi in Python per is_cram

Esempio n. 1

def sniffer(filename):

    try:
        if is_sam(filename): return "SAM"
    except:
        pass

    try:
        if is_bam(filename): return "BAM"
    except:
        pass

    try:
        if is_cram(filename): return "CRAM"
    except:
        pass

    try:
        if is_fastq(filename): return "FASTQ"
    except:
        pass

    try:
        if is_fasta(filename): return "FASTA"
    except:
        pass

Esempio n. 2

File: sniffer.py Progetto: sequana/sequana

def sniffer(filename):

    try:
        if is_sam(filename): return "SAM"
    except:
        pass

    try:
        if is_bam(filename): return "BAM"
    except:
        pass

    try:
        if is_cram(filename): return "CRAM"
    except:
        pass

    try:
        if is_fastq(filename): return "FASTQ"
    except:
        pass

    try:
        if is_fasta(filename): return "FASTA"
    except:
        pass

Esempio n. 3

File: test_bamtools.py Progetto: sequana/sequana

def test_is_cram():
    datatest = sequana_data("test_measles.cram", "testing")
    assert is_cram(datatest) is True

Esempio n. 4

def test_is_cram():
    datatest = sequana_data("test_measles.cram", "testing")
    assert is_cram(datatest) is True