def write_hdf(results,name):
"""
Iterate over the <results> list, mimicking the hierarchical structure of
each entry. Name the resulting file <name>.
"""
from simfMRI.io import _walk
f = h5py.File(name,'w')
for ii,r in enumerate(results):
# Create a top level group for each r
# in results. Then recursively walk r.
# Anything that is not a dict is
# assumed to be data.
fg_ii = f.create_group(str(ii))
_walk(r,fg_ii)
f.close()
def _walk(d,hdf):
"""
Recursively walk the provided dict <d> creating groups or saving data
in <hdf>, as appropriate.
"""
for k,v in d.items():
if isinstance(v, dict):
# print('\n-----\n\n{0}: dict, creating a group'.format(k))
hdfnext = hdf.create_group(k)
_walk(v,hdfnext)
## gettin' all recursive and shit, yo.
else:
if v is None: v = 0
## h5py does not know
## what to do with None.
data = np.array(v)
# print('{0}: data'.format(k))
hdfd = hdf.create_dataset(k,data=data)