Esempio n. 1
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 def test_pooled_caller(self):
     peak_caller = idr.spp_peak_caller(spp_path)
     control_replicates = idr.tagalign_split(self.control, nfiles=2)
     experimental_replicates = idr.tagalign_split(self.experimental,
                                                  nfiles=2)
     peaks = idr.call_peaks_on_pooled_replicates(control_replicates,
                                                 experimental_replicates,
                                                 peak_caller)
     self.assertTrue(idr.file_exists(peaks))
     self.assertTrue(idr.is_peak_file(peaks))
Esempio n. 2
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 def test_spp_caller(self):
     peak_caller = idr.spp_peak_caller(spp_path, cores=1)
     peaks = peak_caller(self.control, self.experimental)
     self.assertTrue(idr.file_exists(peaks))
     self.assertTrue(idr.is_peak_file(peaks))