def perform_sims(config, dirstub, num):
for i in range(num):
i += 1
ttr = TreeToReads(configfi=config, run=0)
diri = "{}{}".format(dirstub, i)
if not os.path.exists(diri):
os.makedirs(diri)
ttr.outd = diri
ttr.run_art()
import unittest
from treetoreads import TreeToReads
#class IntegrationTestCase(unittest.TestCase):
# """Tests that it run`."""
# def can_run(self):
# """Does it run?"""
# self.assertTrue(TreeToReads(configfi='tests/input/test1.cfg',run=1))
# def correct_snp_num(self):
# """Is the expected number of snps getting created?"""
# ttr=TreeToReads(configfi='tests/input/test1.cfg',run=0)
# ttr.selectMutsites()
# assert(len(ttr.rands))
if __name__ == '__main__':
ttr=TreeToReads(configfi='tests/input/test1.cfg',run=0)
ttr.run_art()
ttr=TreeToReads(configfi='seqsim.cfg',run=0)
ttr.run_art()
import unittest
from treetoreads import TreeToReads
#class IntegrationTestCase(unittest.TestCase):
# """Tests that it run`."""
# def can_run(self):
# """Does it run?"""
# self.assertTrue(TreeToReads(configfi='tests/input/test1.cfg',run=1))
# def correct_snp_num(self):
# """Is the expected number of snps getting created?"""
# ttr=TreeToReads(configfi='tests/input/test1.cfg',run=0)
# ttr.selectMutsites()
# assert(len(ttr.rands))
if __name__ == '__main__':
ttr = TreeToReads(configfi='tests/input/test1.cfg', run=0)
ttr.run_art()
ttr = TreeToReads(configfi='example.config', run=0)
ttr.run_art()
