def perform_sims(config, dirstub, num): for i in range(num): i += 1 ttr = TreeToReads(configfi=config, run=0) diri = "{}{}".format(dirstub, i) if not os.path.exists(diri): os.makedirs(diri) ttr.outd = diri ttr.run_art()
import unittest from treetoreads import TreeToReads #class IntegrationTestCase(unittest.TestCase): # """Tests that it run`.""" # def can_run(self): # """Does it run?""" # self.assertTrue(TreeToReads(configfi='tests/input/test1.cfg',run=1)) # def correct_snp_num(self): # """Is the expected number of snps getting created?""" # ttr=TreeToReads(configfi='tests/input/test1.cfg',run=0) # ttr.selectMutsites() # assert(len(ttr.rands)) if __name__ == '__main__': ttr=TreeToReads(configfi='tests/input/test1.cfg',run=0) ttr.run_art() ttr=TreeToReads(configfi='seqsim.cfg',run=0) ttr.run_art()
import unittest from treetoreads import TreeToReads #class IntegrationTestCase(unittest.TestCase): # """Tests that it run`.""" # def can_run(self): # """Does it run?""" # self.assertTrue(TreeToReads(configfi='tests/input/test1.cfg',run=1)) # def correct_snp_num(self): # """Is the expected number of snps getting created?""" # ttr=TreeToReads(configfi='tests/input/test1.cfg',run=0) # ttr.selectMutsites() # assert(len(ttr.rands)) if __name__ == '__main__': ttr = TreeToReads(configfi='tests/input/test1.cfg', run=0) ttr.run_art() ttr = TreeToReads(configfi='example.config', run=0) ttr.run_art()