def main(): argn = len(sys.argv) if argn != 2: usage() sys.exit() seqfile = sys.argv[1] allSeqs = parseSequences(seqfile) for i in range(len(allSeqs)): print ">seq" + str(i), str(i) print allSeqs[i]
def main(): argn = len(sys.argv) if argn != 2: usage() sys.exit() seqfile = sys.argv[1] allSeqs = parseSequences(seqfile) for i in range(len(allSeqs)): print ">seq"+str(i), str(i) print allSeqs[i]
def main(): argn = len(sys.argv) if argn != 2: usage() sys.exit() seqfile = sys.argv[1] allSeqs = parseSequences(seqfile) print "Input Sequence File:", seqfile for seq in allSeqs: print " ", seq Param = Parameters() Stats = Statistics() computeSumPairsScore(allSeqs, Param, Stats) Stats.dumpResult()
def main(): argn = len(sys.argv) if argn != 2: usage() sys.exit() seqfile = sys.argv[1] allSeqs = parseSequences(seqfile) numSeqs = len(allSeqs) allModelSeqs = [] allDataSeqs = [] # odd-indexed sequence is model sequence for i in range(0, numSeqs,2): allModelSeqs.append(allSeqs[i]) # even-indexed sequence is data sequence for i in range(1, numSeqs,2): allDataSeqs.append(allSeqs[i]) allCOSeqs = convertPair2CO (allModelSeqs, allDataSeqs) for seq in allCOSeqs: print seq