def main():
argn = len(sys.argv)
if argn != 2:
usage()
sys.exit()
seqfile = sys.argv[1]
allSeqs = parseSequences(seqfile)
for i in range(len(allSeqs)):
print ">seq" + str(i), str(i)
print allSeqs[i]
def main():
argn = len(sys.argv)
if argn != 2:
usage()
sys.exit()
seqfile = sys.argv[1]
allSeqs = parseSequences(seqfile)
for i in range(len(allSeqs)):
print ">seq"+str(i), str(i)
print allSeqs[i]
def main():
argn = len(sys.argv)
if argn != 2:
usage()
sys.exit()
seqfile = sys.argv[1]
allSeqs = parseSequences(seqfile)
print "Input Sequence File:", seqfile
for seq in allSeqs:
print " ", seq
Param = Parameters()
Stats = Statistics()
computeSumPairsScore(allSeqs, Param, Stats)
Stats.dumpResult()
def main():
argn = len(sys.argv)
if argn != 2:
usage()
sys.exit()
seqfile = sys.argv[1]
allSeqs = parseSequences(seqfile)
print "Input Sequence File:", seqfile
for seq in allSeqs:
print " ", seq
Param = Parameters()
Stats = Statistics()
computeSumPairsScore(allSeqs, Param, Stats)
Stats.dumpResult()
def main():
argn = len(sys.argv)
if argn != 2:
usage()
sys.exit()
seqfile = sys.argv[1]
allSeqs = parseSequences(seqfile)
numSeqs = len(allSeqs)
allModelSeqs = []
allDataSeqs = []
# odd-indexed sequence is model sequence
for i in range(0, numSeqs,2):
allModelSeqs.append(allSeqs[i])
# even-indexed sequence is data sequence
for i in range(1, numSeqs,2):
allDataSeqs.append(allSeqs[i])
allCOSeqs = convertPair2CO (allModelSeqs, allDataSeqs)
for seq in allCOSeqs:
print seq
