Esempio n. 1
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 def setUp(self):
     """
         Prepare the test
     """
     self.sequence = "attgtaggcctgcatgaact"
     self.seq_with_unknown = "atnntagnnngcatgaact"
     self.datadir = utility.get_data_directory(__file__)
Esempio n. 2
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 def setUp(self):
     """
         Prepare the test
     """
     self.sequence = "attgtaggcctgcatgaact"
     self.seq_with_unknown = "atnntagnnngcatgaact"
     self.datadir = utility.get_data_directory(__file__)
Esempio n. 3
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 def setUp(self):
     """ Prepare the test file """
     self.datadir = utility.get_data_directory(__file__)
     fn = os.path.join(self.datadir,"gene_info_test_file.xls")
     self.fh = open(fn)
     self.reader =  csv.reader(self.fh, delimiter="\t")
     self.reader.next() # discard first line
Esempio n. 4
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 def setUp(self):
     """
         Prepare the test file
     """
     self.datadir = utility.get_data_directory(__file__)
 def setUp(self):
     """ Prepare the test file """
     self.datadir = utility.get_data_directory(__file__)