コード例 #1
0
# Message for terminal
###############################################################################
print('\n')
print('**********************************************************************')
print('* Processing ' + str(len(files)) + ' experiments [' +
      str(datetime.datetime.now()) + ']')
print('**********************************************************************')
for (i, file) in enumerate(filenames):
    start = time.time()
    # Load files
    dataA = monet.loadAndHashFactorialCSV(path + folderA + '/' + file + '.csv',
                                          floatMultiplier=coverageRescale)
    dataB = monet.loadAndHashFactorialCSV(path + folderB + '/' + file + '.csv',
                                          floatMultiplier=coverageRescale)
    # Claculate the hashed differences
    differencesHash = monet.calculateFactorialHashError(
        dataA, dataB, monet.sampleDifference)
    deHashed = monet.deHashFactorial(differencesHash)
    # Save output
    np.savetxt(path + file + ".csv", deHashed, fmt='%2.6f', delimiter=",")
    # Terminal Output
    end = time.time()
    print('* {0}) {1} [{2:.2f} min]'.format(i + 1, file, (end - start) / 60))
###############################################################################
# Message for terminal
###############################################################################
print('**********************************************************************')
print('* Finished ' + str(len(files)) + ' experiments [' +
      str(datetime.datetime.now()) + ']')
print('**********************************************************************')
コード例 #2
0
ファイル: mainFactorial.py プロジェクト: zhangpriscilla/MoNeT
if (sensitivitySelector == 2):
    # 010 adult life increase
    # 020 adult life decrease
    title = "Adult Mortality"
    testFileA = "TSA_010.csv"
    testFileB = "TSA_020.csv"
if (sensitivitySelector == 3):
    # 100 fitness cost 10% reduction
    # 200 fitness cost 20% reduction
    title = "Fitness Cost"
    testFileA = "TSA_100.csv"
    testFileB = "TSA_200.csv"
centralData = monet.loadAndHashFactorialCSV(path + centralFile)
probeDataA = monet.loadAndHashFactorialCSV(path + testFileA)
probeDataB = monet.loadAndHashFactorialCSV(path + testFileB)
differencesHashA = monet.calculateFactorialHashError(probeDataA, centralData,
                                                     monet.sampleDifference)
differencesHashB = monet.calculateFactorialHashError(probeDataB, centralData,
                                                     monet.sampleDifference)
errorsA = differencesHashA.values()
errorsB = differencesHashB.values()

deHashedA = monet.deHashFactorial(differencesHashA)
deHashedB = monet.deHashFactorial(differencesHashB)

np.savetxt(path + "deHashedA.csv", deHashedA, fmt='%2.6f', delimiter=",")
np.savetxt(path + "deHashedB.csv", deHashedB, fmt='%2.6f', delimiter=",")

###############################################################################
# Plotting the results
###############################################################################
binsDict = dict(start=0, end=1, size=0.05)
コード例 #3
0
ファイル: DF_SA.py プロジェクト: Chipdelmal/MoNeT
    cData = monet.loadAndHashFactorialCSV(
        pathCF+cfFile+'.csv', floatMultiplier=cScale
    )
    # Filter the SA files for matching IDs
    expCoreID = ["_".join(i.split('_')[0:-1]) for i in saFiles]
    matchingIndices = [i == cfFile for i in expCoreID]
    matchingFiles = list(compress(saFiles, matchingIndices))
    # Go through the SA files doing the differences
    for (j, pFile) in enumerate(matchingFiles):
        # Load probe file
        pData = monet.loadAndHashFactorialCSV(
            pathSA+pFile+'.csv', floatMultiplier=cScale
        )
        # Calculate differences between files
        diffHash = monet.calculateFactorialHashError(
            pData, cData, monet.sampleDifference
        )
        deHashed = monet.deHashFactorial(diffHash)
        # Export results
        np.savetxt(
            pathSA + 'sensitivity/' + pFile + "_SA.csv",
            deHashed, fmt='%2.6f', delimiter=","
        )
        end = time.time()
        count = count + 1
        print('* {0}) {1} [{2:.2f} min]'.format(count, pFile, (end-start)/60))
###############################################################################
# Message for terminal
###############################################################################
print('**********************************************************************')
print('* Finished ' + str(len(saFiles)) + ' experiments [' + str(datetime.datetime.now()) + ']')